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Updated: Sep 24, 2025

Murine Fecal Isolation and Microbiota Transplantation
Published on: May 26, 2023
Fecal microbiota transfer between young and aged mice reverses hallmarks of the aging gut, eye, and brain
Aimée Parker1, Stefano Romano2, Rebecca Ansorge2
1Gut Microbes and Health Research Programme, Quadram Institute, Norwich, NR4 7UQ, UK. aimee.parker@quadram.ac.uk.
Background:
Altered intestinal microbiota composition in later life is associated with inflammaging, declining tissue function, and increased susceptibility to age-associated chronic diseases, including neurodegenerative dementias. Here, we tested the hypothesis that manipulating the intestinal microbiota influences the development of major comorbidities associated with aging and, in particular, inflammation affecting the brain and retina.
Methods:
Using fecal microbiota transplantation, we exchanged the intestinal microbiota of young (3 months), old (18 months), and aged (24 months) mice. Whole metagenomic shotgun sequencing and metabolomics were used to develop a custom analysis workflow, to analyze the changes in gut microbiota composition and metabolic potential. Effects of age and microbiota transfer on the gut barrier, retina, and brain were assessed using protein assays, immunohistology, and behavioral testing.
Results:
We show that microbiota composition profiles and key species enriched in young or aged mice are successfully transferred by FMT between young and aged mice and that FMT modulates resulting metabolic pathway profiles. The transfer of aged donor microbiota into young mice accelerates age-associated central nervous system (CNS) inflammation, retinal inflammation, and cytokine signaling and promotes loss of key functional protein in the eye, effects which are coincident with increased intestinal barrier permeability. Conversely, these detrimental effects can be reversed by the transfer of young donor microbiota.
Conclusions:
These findings demonstrate that the aging gut microbiota drives detrimental changes in the gut-brain and gut-retina axes suggesting that microbial modulation may be of therapeutic benefit in preventing inflammation-related tissue decline in later life. Video abstract.
Insights
Transferring aged gut microbiota to young mice accelerates aging-related inflammation in the brain and retina. Conversely, young microbiota transplantation reverses these detrimental effects, highlighting microbial modulation
Area of Science:
- Microbiology
- Aging Research
- Neuroscience
Background:
- Altered gut microbiota in aging is linked to inflammaging and chronic diseases.
- Aging impacts tissue function, increasing susceptibility to neurodegenerative dementias.
- The study investigates the gut microbiota's role in age-associated comorbidities, particularly brain and retinal inflammation.
Purpose of the Study:
- To test if manipulating intestinal microbiota influences aging comorbidities.
- To examine the impact on inflammation affecting the brain and retina.
- To understand the gut-brain and gut-retina axes in aging.
Main Methods:
- Fecal microbiota transplantation (FMT) between young and aged mice.
- Whole metagenomic shotgun sequencing and metabolomics for microbiota analysis.
- Assessing gut barrier, retina, and brain via protein assays, immunohistology, and behavioral tests.
Main Results:
- FMT successfully transferred microbiota composition and modulated metabolic pathways.
- Aged microbiota transfer accelerated CNS and retinal inflammation in young mice.
- Young microbiota transfer reversed age-associated detrimental effects and increased gut barrier permeability.
Conclusions:
- Aging gut microbiota drives detrimental changes in gut-brain and gut-retina axes.
- Microbial modulation may offer therapeutic benefits for age-related inflammation.
- Targeting the gut microbiota could prevent inflammation-related tissue decline in aging.
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