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Updated: Sep 24, 2025

Generating CRISPR/Cas9 Mediated Monoallelic Deletions to Study Enhancer Function in Mouse Embryonic Stem Cells
Published on: April 2, 2016
Dissecting protein function in vivo: Engineering allelic series in mice using CRISPR-Cas9 technology
Annelise M Cassidy1, Emin Kuliyev2, Destinée B Thomas1
1Department of Medical and Molecular Genetics, Indiana University School of Medicine, Indianapolis, IN, United States.
CRISPR-Cas9 technology enables efficient generation of mouse models with specific mutations for creating allelic series. This study details methods for missense mutations, deletions, and insertions to dissect gene function in vivo.
Area of Science:
- Genetics
- Molecular Biology
- Biotechnology
Background:
- Allelic series are crucial for studying gene function and protein structure.
- Traditional methods for generating allelic series in mice are time-consuming and complex.
- CRISPR-Cas9 technology offers a precise and efficient alternative for creating genetic mutations.
Purpose of the Study:
- To describe step-by-step procedures for generating diverse mutations using CRISPR-Cas9.
- To demonstrate the utility of CRISPR-Cas9 for creating allelic series in mouse models.
- To dissect protein function in vivo using precisely engineered mutations.
Main Methods:
- Utilized CRISPR-Cas9 gene editing technology for targeted mutagenesis in mice.
- Developed protocols for generating missense mutations.
- Established methods for creating large in-frame deletions and insertions of genetic material.
Main Results:
- Successfully generated three distinct types of mutations (missense, deletion, insertion) using CRISPR-Cas9.
- Demonstrated the feasibility of creating allelic series for functional gene analysis.
- Used SCY1-like 1 (Scyl1) as a model gene to validate the procedures.
Conclusions:
- CRISPR-Cas9 technology provides a powerful and cost-effective platform for generating allelic series.
- These methods facilitate the dissection of gene and protein function in vivo.
- The described protocols offer valuable tools for genetic research and model organism development.
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