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Updated: Sep 23, 2025

Atomic Force Microscopy Combined with Infrared Spectroscopy as a Tool to Probe Single Bacterium Chemistry
Published on: September 15, 2020
Mid-infrared spectroscopy and microscopy of subcellular structures in eukaryotic cells with atomic force microscopy -
Luca Quaroni1,2, Katarzyna Pogoda1, Joanna Wiltowska-Zuber1
1Department of Experimental Physics of Complex Systems, Institute of Nuclear Physics, Polish Academy of Sciences PL-31342 Kraków Poland luca.quaroni@uj.edu.pl.
Abstract:
Atomic force microscopy - infrared (AFM-IR) spectroscopy allows spectroscopic studies in the mid-infrared (mid-IR) spectral region with a spatial resolution better than is allowed by the diffraction limit. We show that the high spatial resolution can be used to perform spectroscopic and imaging studies at the subcellular level in fixed eukaryotic cells. We collect AFM-IR images of subcellular structures that include lipid droplets, vesicles and cytoskeletal filaments, by relying on the intrinsic contrast from IR light absorption. We also obtain AFM-IR absorption spectra of individual subcellular structures. Most spectra show features that are recognizable in the IR absorption spectra of cells and tissue obtained with FTIR technology, including absorption bands characteristic of phospholipids and polypeptides. The quality of the spectra and of the images opens the way to structure and composition studies at the subcellular level using mid-IR absorption spectroscopy.
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