Genomic Features of High-Level Gentamicin-Resistant Enterococcus faecalis Strain LREF-1 from India
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Updated: Sep 23, 2025

Characterization of a Pathogenic Escherichia coli Strain Derived from Oreochromis spp. Farms Using Whole-Genome Sequencing
Published on: December 23, 2022
Yogesh Mudaliar1, Afrah Shenaz Ahmed1, Nehaa K P1
1Department of Biotechnology, Sri Ramachandra Institute of Higher Education and Research, Chennai, Tamil Nadu, India.
Abstract:
Enterococcus faecalis strain LREF-1 was isolated from a urine sample from India; it belongs to sequence type 28 (ST28), which is associated with nosocomial infections. The strain carries genes for resistance to multiple antibiotics and resistance to various drug classes, including tetracycline, erythromycin, and high-level gentamicin, along with virulence factors.
Insights
A multidrug-resistant Enterococcus faecalis strain (ST28) was identified in India. This strain exhibits resistance to common antibiotics and possesses virulence factors, posing a significant threat in healthcare settings.
Area of Science:
- Microbiology
- Infectious Diseases
- Antimicrobial Resistance
Background:
- Enterococcus faecalis is a common cause of hospital-acquired infections.
- Certain sequence types (STs) of E. faecalis are frequently associated with nosocomial outbreaks.
- Antimicrobial resistance and virulence factors contribute to the pathogenicity of E. faecalis.
Purpose of the Study:
- To characterize a specific Enterococcus faecalis strain (LREF-1) isolated from a urine sample.
- To identify the sequence type and antimicrobial resistance profile of the strain.
- To investigate the presence of virulence factors in the identified strain.
Main Methods:
- Bacterial isolation and identification from a clinical urine sample.
- Molecular subtyping to determine the sequence type (ST28).
- Antimicrobial susceptibility testing to assess resistance patterns.
- Detection of genes encoding antibiotic resistance and virulence factors.
Main Results:
- Enterococcus faecalis strain LREF-1 was isolated from a urine sample in India.
- The strain was identified as belonging to sequence type 28 (ST28).
- LREF-1 exhibited resistance to multiple antibiotics, including tetracycline, erythromycin, and high-level gentamicin.
- Genes conferring antibiotic resistance and virulence factors were detected in the strain.
Conclusions:
- Enterococcus faecalis ST28 is present in India and associated with nosocomial infections.
- The LREF-1 strain represents a multidrug-resistant pathogen with potential for causing severe infections.
- Characterization of such strains is crucial for infection control and treatment strategies.
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