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Updated: Sep 23, 2025

Using RNA-sequencing to Detect Novel Splice Variants Related to Drug Resistance in In Vitro Cancer Models
Published on: December 9, 2016
Deficiency of the splicing factor RBM10 limits EGFR inhibitor response in EGFR-mutant lung cancer
Shigeki Nanjo1,2,3, Wei Wu1,2, Niki Karachaliou4
1Department of Medicine and.
Abstract:
Molecularly targeted cancer therapy has improved outcomes for patients with cancer with targetable oncoproteins, such as mutant EGFR in lung cancer. Yet, the long-term survival of these patients remains limited, because treatment responses are typically incomplete. One potential explanation for the lack of complete and durable responses is that oncogene-driven cancers with activating mutations of EGFR often harbor additional co-occurring genetic alterations. This hypothesis remains untested for most genetic alterations that co-occur with mutant EGFR. Here, we report the functional impact of inactivating genetic alterations of the mRNA splicing factor RNA-binding motif 10 (RBM10) that co-occur with mutant EGFR. RBM10 deficiency decreased EGFR inhibitor efficacy in patient-derived EGFR-mutant tumor models. RBM10 modulated mRNA alternative splicing of the mitochondrial apoptotic regulator Bcl-x to regulate tumor cell apoptosis during treatment. Genetic inactivation of RBM10 diminished EGFR inhibitor-mediated apoptosis by decreasing the ratio of (proapoptotic) Bcl-xS to (antiapoptotic) Bcl-xL isoforms of Bcl-x. RBM10 deficiency was a biomarker of poor response to EGFR inhibitor treatment in clinical samples. Coinhibition of Bcl-xL and mutant EGFR overcame the resistance induced by RBM10 deficiency. This study sheds light on the role of co-occurring genetic alterations and on the effect of splicing factor deficiency on the modulation of sensitivity to targeted kinase inhibitor cancer therapy.
Insights
Deficiency in the RNA-binding motif 10 (RBM10) splicing factor reduces the effectiveness of EGFR inhibitors in lung cancer. Targeting Bcl-xL alongside EGFR inhibitors can overcome this resistance, improving patient outcomes.
Area of Science:
- Oncology
- Molecular Biology
- Genetics
Background:
- Molecularly targeted therapies, like EGFR inhibitors, have improved lung cancer outcomes.
- However, incomplete treatment responses and limited long-term survival persist due to co-occurring genetic alterations.
- The role of genetic alterations co-occurring with mutant EGFR remains largely unexplored.
Purpose of the Study:
- To investigate the functional impact of RNA-binding motif 10 (RBM10) inactivation in EGFR-mutant lung cancer.
- To determine if RBM10 deficiency affects sensitivity to EGFR inhibitors.
- To explore the therapeutic implications of RBM10's role in apoptosis regulation.
Main Methods:
- Utilized patient-derived EGFR-mutant tumor models.
- Assessed the effect of RBM10 deficiency on EGFR inhibitor efficacy.
- Analyzed mRNA alternative splicing of Bcl-x and its isoforms (Bcl-xS and Bcl-xL).
- Correlated RBM10 deficiency with clinical response to EGFR inhibitors.
Main Results:
- RBM10 deficiency significantly decreased EGFR inhibitor efficacy in preclinical models.
- RBM10 deficiency altered Bcl-x splicing, reducing the proapoptotic Bcl-xS/antiapoptotic Bcl-xL ratio.
- RBM10 inactivation diminished EGFR inhibitor-induced apoptosis.
- RBM10 deficiency served as a biomarker for poor response to EGFR inhibitors in patients.
Conclusions:
- RBM10 inactivation contributes to resistance against EGFR inhibitors in lung cancer.
- RBM10 regulates apoptosis sensitivity through alternative splicing of Bcl-x.
- Combined inhibition of Bcl-xL and mutant EGFR can overcome RBM10-deficiency-induced resistance.
- Co-occurring genetic alterations, like RBM10 deficiency, significantly impact targeted therapy efficacy.
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