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Rare variant of TBL1XR1 in West syndrome: A case report
Yajun Shen1,2, Meng Yuan1,2, Huan Luo1,2
1Department of Pediatrics, West China Second University Hospital, Sichuan University, Chengdu, China.
Insights
West syndrome, a severe infant epilepsy, is linked to the rare TBL1XR1 gene. This study identifies a new pathogenic variant in TBL1XR1, strengthening its role in West syndrome development.
Area of Science:
- Genetics
- Neurology
- Pediatrics
Background:
- West syndrome (WS) is an early-onset epileptic encephalopathy.
- Over 30 genes are associated with WS, but TBL1XR1 is rarely reported.
- Limited data exists on TBL1XR1 pathogenic variants in WS.
Observation:
- Exome sequencing identified a de novo TBL1XR1 variant (p.Glu63Lys) in an infant with WS.
- The variant was classified as likely pathogenic by ACMG guidelines.
- Clinical data from TBL1XR1-related WS cases showed heterogeneity.
Findings:
- A novel, likely pathogenic de novo variant in the TBL1XR1 gene was identified in a patient with West syndrome.
- This finding expands the known spectrum of TBL1XR1 pathogenic variants.
- The study confirms TBL1XR1 as a causative gene for West syndrome.
Implications:
- This research strengthens the genetic evidence linking TBL1XR1 to West syndrome.
- It highlights the importance of considering TBL1XR1 in the genetic diagnosis of unexplained West syndrome cases.
- Further research into TBL1XR1's role may reveal therapeutic targets for West syndrome.
Background:
West syndrome (WS) is an epileptic encephalopathy (EE) that begins in children 4-7 months of age (in rare cases older than 2 years). To date, over 30 genes that have been reported to be related to WS. Reports involving the extremely rare pathogenic gene, transducin beta-like 1-X- linked receptor 1(TBL1XR1) are quite limited.
Methods:
We performed exome sequencing (ES) of family trios for this infant. We also collected and summarized the clinical data for reported heterozygous germline variants of TBL1XR1. Moreover, we reviewed all published cases and summarized the clinical features and genetic variants of TBL1XR1.
Results:
ES revealed a de novo variant in TBL1XR1 [NM_024665.5: exon4: c.187G > A (p.Glu63Lys)]. This variant was classified as likely pathogenic according to the ACMG (American College of Medical Genetics and Genomics) guidelines and was verified by Sanger sequencing. Further conservation analyses revealed a high conservation among several species. There was clinical heterogeneity among all patients with TBL1XR1-related West syndrome.
Conclusion:
Our results expand the pathogenic variant spectrum of TBL1XR1 and strengthen the pathogenic evidence of TBL1XR1 in West syndrome.
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