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Understanding the Impact of Temperate Bacteriophages on Their Lysogens Through Transcriptomics
Published on: January 5, 2024
Genomic characterization of lytic bacteriophages targeting genetically diverse Pseudomonas aeruginosa clinical
Hayley R Nordstrom1, Daniel R Evans1, Amanda G Finney1
1Division of Infectious Diseases, University of Pittsburgh School of Medicine, Pittsburgh, Pennsylvania 15213, USA.
Abstract:
Pseudomonas aeruginosa infections can be difficult to treat and new therapeutics are needed. Bacteriophage therapy is a promising alternative to traditional antibiotics, but large numbers of isolated and characterized phages are lacking. We collected 23 diverse P. aeruginosa isolates from people with cystic fibrosis (CF) and clinical infections, and used them to screen and isolate over a dozen P. aeruginosa-targeting phages from hospital wastewater. Phages were characterized with genome sequencing, comparative genomics, and lytic activity screening against all 23 bacterial host isolates. We evolved bacterial mutants that were resistant to phage infection for four different phages, and used genome sequencing and functional analysis to study them further. We also tested phages for their ability to kill P. aeruginosa grown in biofilms in vitro and ex vivo on CF airway epithelial cells. Overall, this study demonstrates how systematic genomic and phenotypic characterization can be deployed to develop bacteriophages as precision antibiotics.
Insights
New bacteriophages targeting Pseudomonas aeruginosa were isolated and characterized. This research advances phage therapy as a precision antibiotic alternative for difficult-to-treat infections.
Area of Science:
- Microbiology
- Infectious Diseases
- Genomics
Background:
- Pseudomonas aeruginosa infections pose significant treatment challenges.
- Bacteriophage therapy offers a potential alternative to conventional antibiotics.
- A scarcity of isolated and characterized phages hinders therapeutic development.
Purpose of the Study:
- To isolate and characterize bacteriophages targeting Pseudomonas aeruginosa.
- To evaluate the efficacy of these phages against clinical isolates and biofilms.
- To investigate mechanisms of phage resistance in P. aeruginosa.
Main Methods:
- Isolation of bacteriophages from hospital wastewater using P. aeruginosa clinical isolates.
- Genomic sequencing and comparative genomics of isolated phages.
- Lytic activity screening, resistance evolution studies, and in vitro/ex vivo biofilm assays.
Main Results:
- Over a dozen P. aeruginosa-targeting phages were isolated and characterized.
- Phages demonstrated lytic activity against diverse clinical isolates.
- Mechanisms of phage resistance were elucidated through genomic and functional analyses.
- Phages showed efficacy against P. aeruginosa in biofilms and on CF airway epithelial cells.
Conclusions:
- Systematic genomic and phenotypic characterization is crucial for developing bacteriophages as precision antibiotics.
- This study provides a foundation for advancing phage therapy against P. aeruginosa infections.
- The isolated phages represent a valuable resource for future therapeutic applications.
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