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Chromatin Position Affects Gene Expression02:35

Chromatin Position Affects Gene Expression

23.7K
Chromatin is the massive complex of DNA and proteins packaged inside the nucleus. The complexity of chromatin folding and how it is packaged inside the nucleus greatly influences  access to genetic information. Generally, the nucleus' periphery is considered transcriptionally repressive, while the cell's interior is considered a transcriptionally active area. 
Topologically Associated Domains (TADs)
The 3-dimensional positioning of chromatin in the nucleus influences the...
23.7K
Nucleosome Remodeling02:54

Nucleosome Remodeling

9.6K
Nucleosomes are the basic units of chromatin compaction. Each nucleosome consists of the DNA bound tightly around a histone core, which makes the DNA inaccessible to DNA binding proteins such as DNA polymerase and RNA polymerase. Hence, the fundamental problem is to ensure access to DNA when appropriate, despite the compact and protective chromatin structure.
Nucleosome remodeling complex
Eukaryotic cells have specialized enzymes called ATP-dependent nucleosome remodeling enzymes. These enzymes...
9.6K
Spreading of Chromatin Modifications02:25

Spreading of Chromatin Modifications

8.5K
The histone proteins in the nucleosomes are post-translationally modified (PTM) to increase or decrease access to DNA. The commonly observed PTMs are methylation, acetylation, phosphorylation, and ubiquitination of lysine amino acids in the histone H3 tail region. These histone modifications have specific meaning for the cell. Hence, they are called "histone code". The protein complex involved in histone modification is termed as "reader-writer" complex.
Writers
The writer...
8.5K
Epigenetic Regulation01:37

Epigenetic Regulation

3.1K
Epigenetic changes alter the physical structure of the DNA without changing the genetic sequence and often regulate whether genes are turned on or off. This regulation ensures that each cell produces only proteins necessary for its function. For example, proteins that promote bone growth are not produced in muscle cells. Epigenetic mechanisms play an essential role in healthy development. Conversely, precisely regulated epigenetic mechanisms are disrupted in diseases like cancer.
X-chromosome...
3.1K
Duplication of Chromatin Structure02:05

Duplication of Chromatin Structure

6.1K
The process of chromosome duplication during cell division requires genome-wide disruption and re-assembly of chromatin. The chromatin structure must be accurately inherited, reassembled, and maintained in the daughter cells to ensure lineage propagation.
The basic unit of the chromatin is the nucleosome, consisting of DNA wrapped around octameric histone proteins and short stretches of linker DNA separating individual nucleosomes. The histone proteins within the nucleosome have their...
6.1K
Inheritance of Chromatin Structures03:17

Inheritance of Chromatin Structures

6.6K
Epigenetics is the study of inherited changes in a cell's phenotype without changing the DNA sequences. It provides a form of memory for the differential gene expression pattern to maintain cell lineage, position-effect variegation, dosage compensation, and maintenance of chromatin structures such as telomeres and centromeres. For example, the structure and location of the centromere on chromosomes are epigenetically inherited. Its functionality is not dictated or ensured by the underlying...
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Related Experiment Video

Updated: Sep 21, 2025

An Integrated Platform for Genome-wide Mapping of Chromatin States Using High-throughput ChIP-sequencing in Tumor Tissues
10:41

An Integrated Platform for Genome-wide Mapping of Chromatin States Using High-throughput ChIP-sequencing in Tumor Tissues

Published on: April 5, 2018

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Large-Scale Chromatin Rearrangements in Cancer.

Kosuke Yamaguchi1, Xiaoying Chen1, Asami Oji2

  • 1UMR7216 Epigenetics and Cell Fate, Université Paris Cité, CNRS, F-75006 Paris, France.

Cancers
|May 28, 2022
PubMed
Summary

Epigenetic abnormalities drive cancer initiation and progression by altering DNA methylation and histone modifications. Understanding these large-scale chromatin changes offers new biological markers and therapeutic targets for cancer treatment.

Keywords:
chromatinepigeneticsgenome organizationtransformation

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CRISPR-Mediated Reorganization of Chromatin Loop Structure
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CRISPR-Mediated Reorganization of Chromatin Loop Structure

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3D Multicolor DNA FISH Tool to Study Nuclear Architecture in Human Primary Cells
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3D Multicolor DNA FISH Tool to Study Nuclear Architecture in Human Primary Cells

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Related Experiment Videos

Last Updated: Sep 21, 2025

An Integrated Platform for Genome-wide Mapping of Chromatin States Using High-throughput ChIP-sequencing in Tumor Tissues
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CRISPR-Mediated Reorganization of Chromatin Loop Structure
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CRISPR-Mediated Reorganization of Chromatin Loop Structure

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3D Multicolor DNA FISH Tool to Study Nuclear Architecture in Human Primary Cells
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3D Multicolor DNA FISH Tool to Study Nuclear Architecture in Human Primary Cells

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Area of Science:

  • Oncology
  • Epigenetics
  • Genomics

Background:

  • Epigenetic alterations are prevalent in cancer, with some actively driving disease.
  • These changes impact DNA methylation and histone modifications, affecting gene expression.
  • The epigenome's structure and regulation are crucial for cellular homeostasis.

Purpose of the Study:

  • To review recent literature on epigenome deregulation in cancer.
  • To focus on large-scale chromatin changes and their role in cancer.
  • To explore the impact of epigenome changes on cancer therapies and future research.

Main Methods:

  • Literature review of recent scientific publications.
  • Analysis of epigenome deregulation, focusing on chromatin structure.
  • Examination of factors influencing epigenome changes in cancer development.

Main Results:

  • Large-scale chromatin changes, including global DNA methylation and histone modification alterations, are key in cancer.
  • Various events like mutations, metabolic shifts, and infections can profoundly alter the epigenome, promoting cancer.
  • Epigenetic modifications serve as potential biomarkers and therapeutic targets.

Conclusions:

  • Epigenome deregulation, particularly large-scale chromatin changes, is a significant driver of cancer initiation and progression.
  • Targeting epigenetic mechanisms presents promising therapeutic strategies.
  • Single-cell approaches are crucial for advancing our understanding of cancer epigenetics.