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Updated: Sep 20, 2025

Using the E1A Minigene Tool to Study mRNA Splicing Changes
Published on: April 22, 2021
AKT constitutes a signal-promoted alternative exon-junction complex that regulates nonsense-mediated mRNA decay
Hana Cho1, Elizabeth T Abshire1, Maximilian W Popp1
1Department of Biochemistry and Biophysics, School of Medicine and Dentistry, University of Rochester, Rochester, NY 14642, USA; Center for RNA Biology, University of Rochester, Rochester, NY 14642, USA.
Abstract:
Despite a long appreciation for the role of nonsense-mediated mRNA decay (NMD) in destroying faulty, disease-causing mRNAs and maintaining normal, physiologic mRNA abundance, additional effectors that regulate NMD activity in mammalian cells continue to be identified. Here, we describe a haploid-cell genetic screen for NMD effectors that has unexpectedly identified 13 proteins constituting the AKT signaling pathway. We show that AKT supersedes UPF2 in exon-junction complexes (EJCs) that are devoid of RNPS1 but contain CASC3, defining an unanticipated insulin-stimulated EJC. Without altering UPF1 RNA binding or ATPase activity, AKT-mediated phosphorylation of the UPF1 CH domain at T151 augments UPF1 helicase activity, which is critical for NMD and also decreases the dependence of helicase activity on ATP. We demonstrate that upregulation of AKT signaling contributes to the hyperactivation of NMD that typifies Fragile X syndrome, as exemplified using FMR1-KO neural stem cells derived from induced pluripotent stem cells.
Insights
Researchers discovered the AKT signaling pathway regulates nonsense-mediated mRNA decay (NMD). AKT enhances UPF1 helicase activity, crucial for NMD, and is implicated in Fragile X syndrome.
Area of Science:
- Molecular Biology
- Cell Biology
- Genetics
Background:
- Nonsense-mediated mRNA decay (NMD) is a critical cellular surveillance pathway for degrading aberrant mRNAs.
- While NMD's role is established, additional regulatory factors in mammalian cells are continually being discovered.
Purpose of the Study:
- To identify novel effectors that regulate NMD activity in mammalian cells.
- To elucidate the mechanism by which these novel effectors modulate NMD.
Main Methods:
- Conducted a haploid-cell genetic screen to identify NMD regulators.
- Utilized induced pluripotent stem cells (iPSCs) derived from Fragile X syndrome patient models (FMR1-KO neural stem cells).
Main Results:
- Identified 13 proteins of the AKT signaling pathway as NMD effectors.
- Demonstrated that AKT phosphorylates UPF1 at T151, enhancing its helicase activity, which is essential for NMD.
- Showed AKT supersedes UPF2 in specific exon-junction complexes (EJCs).
- Linked AKT signaling upregulation to NMD hyperactivation in Fragile X syndrome models.
Conclusions:
- The AKT signaling pathway is an unanticipated regulator of NMD.
- AKT-mediated phosphorylation of UPF1 is a key mechanism controlling NMD efficiency.
- Dysregulated AKT signaling contributes to NMD hyperactivation in Fragile X syndrome.
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