AKT constitutes a signal-promoted alternative exon-junction complex that regulates nonsense-mediated mRNA decay

Hana Cho1, Elizabeth T Abshire1, Maximilian W Popp1

  • 1Department of Biochemistry and Biophysics, School of Medicine and Dentistry, University of Rochester, Rochester, NY 14642, USA; Center for RNA Biology, University of Rochester, Rochester, NY 14642, USA.

Molecular Cell
|June 8, 2022
PubMed

Insights

Researchers discovered the AKT signaling pathway regulates nonsense-mediated mRNA decay (NMD). AKT enhances UPF1 helicase activity, crucial for NMD, and is implicated in Fragile X syndrome.

Area of Science:

  • Molecular Biology
  • Cell Biology
  • Genetics

Background:

  • Nonsense-mediated mRNA decay (NMD) is a critical cellular surveillance pathway for degrading aberrant mRNAs.
  • While NMD's role is established, additional regulatory factors in mammalian cells are continually being discovered.

Purpose of the Study:

  • To identify novel effectors that regulate NMD activity in mammalian cells.
  • To elucidate the mechanism by which these novel effectors modulate NMD.

Main Methods:

  • Conducted a haploid-cell genetic screen to identify NMD regulators.
  • Utilized induced pluripotent stem cells (iPSCs) derived from Fragile X syndrome patient models (FMR1-KO neural stem cells).

Main Results:

  • Identified 13 proteins of the AKT signaling pathway as NMD effectors.
  • Demonstrated that AKT phosphorylates UPF1 at T151, enhancing its helicase activity, which is essential for NMD.
  • Showed AKT supersedes UPF2 in specific exon-junction complexes (EJCs).
  • Linked AKT signaling upregulation to NMD hyperactivation in Fragile X syndrome models.

Conclusions:

  • The AKT signaling pathway is an unanticipated regulator of NMD.
  • AKT-mediated phosphorylation of UPF1 is a key mechanism controlling NMD efficiency.
  • Dysregulated AKT signaling contributes to NMD hyperactivation in Fragile X syndrome.

Related Concept Videos

Nonsense-mediated mRNA Decay02:27

Nonsense-mediated mRNA Decay

The Upf proteins that carry out nonsense-mediated decay (NMD) are found in all eukaryotic organisms, including humans. Each protein has an individual role, but they need to work in collaboration. Upf1 is an ATP-dependent RNA helicase that unwinds the RNA helix. Because Upf1 can unwind any RNA, Upf2 and Upf3 are required to help Upf1 discriminate between nonsense and normal mRNAs.
Usually, Upf3 binds to an Exon Junction Complex (EJC) at mRNA splice sites. If a ribosome fully translates the mRNA,...
10.9K
Alternative RNA Splicing02:18

Alternative RNA Splicing

Alternative RNA splicing is the regulated splicing of exons and introns to produce different mature mRNAs from a single pre-mRNA. Unlike in constitutive splicing where a single gene produces a single type of mRNA, alternative splicing allows an organism to produce multiple proteins from a single gene and plays an important role in protein diversity.
There are five types of alternative RNA splicing that vary in the ways the pre-mRNA segments are removed or retained in the mature mRNA. The first...
21.8K
Nuclear Export of mRNA02:31

Nuclear Export of mRNA

Before mRNAs are exported to the cytoplasm, it is crucial to check each mRNA for structural and functional integrity. Eukaryotic cells use several different mechanisms, collectively known as mRNA surveillance, to look for irregularities in mRNAs. Irregular or aberrant mRNA are rapidly degraded by various enzymes. If a defective mRNA escapes the surveillance, it would be translated into a protein which would either be non-functional or not function properly. One of the primary irregularities in...
7.9K
Chromatin Structure Regulates pre-mRNA Processing02:41

Chromatin Structure Regulates pre-mRNA Processing

In eukaryotic cells, nascent mRNA transcripts need to undergo many post-transcriptional modifications to reach the cell cytoplasm and translate into functional proteins. For a long time, transcription and pre-mRNA processing were considered two independent events that occur sequentially in the cell. However, it has now been well established that transcription and pre-mRNA processing are two simultaneous processes that are precisely regulated inside the cell.
The chromatin structure, especially...
7.2K
RNA Splicing01:32

RNA Splicing

Splicing is the process by which eukaryotic RNA is edited before its translation into protein. The RNA strand transcribed from eukaryotic DNA is called the primary transcript. The primary transcripts that become mRNAs are called precursor messenger RNAs (pre-mRNAs). Eukaryotic pre-mRNA contains alternating sequences of exons and introns. Exons are nucleotide sequences that code for proteins, whereas introns are the non-coding regions. In RNA splicing, introns are removed and exons are bonded...
57.2K