Transcriptional Effects of Candidate COVID-19 Treatments on Cardiac Myocytes
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Updated: Sep 20, 2025

Viral Transgene Expression in Rodent Hearts and the Assessment of Cardiac Arrhythmia Risk
Published on: July 27, 2022
Tobias Jakobi1, Julia Groß2,3, Lukas Cyganek4,5
1Department of Internal Medicine and the Translational Cardiovascular Research Center, University of Arizona - College of Medicine - Phoenix, Phoenix, AZ, United States.
Insights
Repurposed COVID-19 drugs, specifically lopinavir/ritonavir and lopinavir/ritonavir/interferon-beta, showed unfavorable changes in cardiac gene programs. This research highlights potential negative effects on heart function from these antiviral interventions.
Area of Science:
- Cardiology
- Virology
- Pharmacology
Background:
- Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) causes COVID-19, a disease linked to significant morbidity, mortality, and cardiac complications like cardiomyopathy.
- Repurposing existing drugs is a strategy to accelerate COVID-19 treatment development.
- The cardiac effects of repurposed drugs, particularly concerning the angiotensin-converting enzyme 2 receptor (ACE2) pathway, require thorough investigation.
Purpose of the Study:
- To investigate the impact of repurposed drugs on cardiac cells at a molecular level.
- To identify potential adverse effects of specific repurposed drugs on cardiac gene expression programs.
Main Methods:
- Human induced pluripotent stem cell-derived cardiac myocytes (hiPSC-CMs) were exposed to five repurposed drugs: remdesivir, lopinavir/ritonavir, lopinavir/ritonavir/interferon beta (INF-β), hydroxychloroquine, and chloroquine.
- Transcriptional profiling via RNA sequencing was employed to analyze global gene expression changes in treated hiPSC-CMs compared to controls.
Main Results:
- RNA sequencing revealed significant alterations in gene programs associated with calcium handling and endoplasmic reticulum stress response.
- Lopinavir/ritonavir and lopinavir/ritonavir/interferon-beta exhibited the most prominent changes in cardiac gene expression.
- Differential gene expression analysis data is accessible online for further exploration.
Conclusions:
- Transcriptional profiling of hiPSC-CMs treated with repurposed COVID-19 drugs identified potentially detrimental changes.
- Lopinavir/ritonavir and lopinavir/ritonavir/interferon-beta demonstrated unfavorable effects on key cardiac gene programs, suggesting potential negative impacts on heart function.
Introduction:
Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) disease (COVID-19) has emerged as a major cause of morbidity and mortality worldwide, placing unprecedented pressure on healthcare. Cardiomyopathy is described in patients with severe COVID-19 and increasing evidence suggests that cardiovascular involvement portends a high mortality. To facilitate fast development of antiviral interventions, drugs initially developed to treat other diseases are currently being repurposed as COVID-19 treatments. While it has been shown that SARS-CoV-2 invades cells through the angiotensin-converting enzyme 2 receptor (ACE2), the effect of drugs currently repurposed to treat COVID-19 on the heart requires further investigation.
Methods:
Human induced pluripotent stem cell-derived cardiac myocytes (hiPSC-CMs) were treated with five repurposed drugs (remdesivir, lopinavir/ritonavir, lopinavir/ritonavir/interferon beta (INF-β), hydroxychloroquine, and chloroquine) and compared with DMSO controls. Transcriptional profiling was performed to identify global changes in gene expression programs.
Results:
RNA sequencing of hiPSC-CMs revealed significant changes in gene programs related to calcium handling and the endoplasmic reticulum stress response, most prominently for lopinavir/ritonavir and lopinavir/ritonavir/interferon-beta. The results of the differential gene expression analysis are available for interactive access at https://covid19drugs.jakobilab.org.
Conclusion:
Transcriptional profiling in hiPSC-CMs treated with COVID-19 drugs identified unfavorable changes with lopinavir/ritonavir and lopinavir/ritonavir/INF-β in key cardiac gene programs that may negatively affect heart function.
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