Screening the Potential Biomarkers of COVID-19-Related Thrombosis Through Bioinformatics Analysis

Peng Qi1, Mengjie Huang2, Tanshi Li1

  • 1Department of Emergency, First Medical Center of Chinese PLA General Hospital, Beijing, China.

Frontiers in Genetics
|June 13, 2022
PubMed

Insights

Critical illness from COVID-19 often involves thrombosis. Identifying common gene targets between COVID-19 and thrombosis offers therapeutic potential for severe cases, improving survival rates.

Area of Science:

  • Genomics and Bioinformatics
  • Molecular Biology
  • Immunology

Background:

  • Critically ill patients with COVID-19 frequently develop thrombosis.
  • Anticoagulant therapy correlates with improved survival rates in COVID-19 patients.
  • Common molecular targets between COVID-19 and thrombosis may hold therapeutic value for severe disease.

Purpose of the Study:

  • To identify common differentially expressed genes (co-DEGs) between COVID-19 and thrombosis.
  • To explore the biological functions and molecular mechanisms of these co-DEGs.
  • To identify potential therapeutic biomarkers for COVID-19-related thrombosis.

Main Methods:

  • Downloaded gene expression profiling data from Gene Expression Omnibus (GEO).
  • Performed functional enrichment analysis and constructed protein-protein interaction (PPI) networks.
  • Identified hub genes within the co-DEG network.

Main Results:

  • Identified 8320 upregulated and 7651 downregulated genes in COVID-19 patients; 368 upregulated and 240 downregulated genes in thrombosis patients.
  • Enriched terms included cytosolic ribosomes and structural constituents of ribosomes.
  • Identified RPS7, IGF1R, DICER1, ERH, MCTS1, TNPO1 as upregulated hub genes, and FLNA, PXN as downregulated hub genes.

Conclusions:

  • Novel potential biomarkers for COVID-19-related thrombosis were identified.
  • These biomarkers may offer new therapeutic strategies for severe COVID-19.
  • Understanding shared molecular mechanisms can reduce severe COVID-19 outcomes.