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Screening the Potential Biomarkers of COVID-19-Related Thrombosis Through Bioinformatics Analysis
Peng Qi1, Mengjie Huang2, Tanshi Li1
1Department of Emergency, First Medical Center of Chinese PLA General Hospital, Beijing, China.
Insights
Critical illness from COVID-19 often involves thrombosis. Identifying common gene targets between COVID-19 and thrombosis offers therapeutic potential for severe cases, improving survival rates.
Area of Science:
- Genomics and Bioinformatics
- Molecular Biology
- Immunology
Background:
- Critically ill patients with COVID-19 frequently develop thrombosis.
- Anticoagulant therapy correlates with improved survival rates in COVID-19 patients.
- Common molecular targets between COVID-19 and thrombosis may hold therapeutic value for severe disease.
Purpose of the Study:
- To identify common differentially expressed genes (co-DEGs) between COVID-19 and thrombosis.
- To explore the biological functions and molecular mechanisms of these co-DEGs.
- To identify potential therapeutic biomarkers for COVID-19-related thrombosis.
Main Methods:
- Downloaded gene expression profiling data from Gene Expression Omnibus (GEO).
- Performed functional enrichment analysis and constructed protein-protein interaction (PPI) networks.
- Identified hub genes within the co-DEG network.
Main Results:
- Identified 8320 upregulated and 7651 downregulated genes in COVID-19 patients; 368 upregulated and 240 downregulated genes in thrombosis patients.
- Enriched terms included cytosolic ribosomes and structural constituents of ribosomes.
- Identified RPS7, IGF1R, DICER1, ERH, MCTS1, TNPO1 as upregulated hub genes, and FLNA, PXN as downregulated hub genes.
Conclusions:
- Novel potential biomarkers for COVID-19-related thrombosis were identified.
- These biomarkers may offer new therapeutic strategies for severe COVID-19.
- Understanding shared molecular mechanisms can reduce severe COVID-19 outcomes.
Abstract:
A high proportion of critically ill patients with coronavirus disease 2019 (COVID-19) experience thrombosis, and there is a strong correlation between anticoagulant therapy and the COVID-19 survival rate, indicating that common COVID-19 and thrombosis targets have potential therapeutic value for severe COVID-19.Gene expression profiling data were downloaded from Gene Expression Omnibus (GEO), and common differentially expressed genes (co-DEGs) were identified. The potential biological functions of these co-DEGs were explored by functional enrichment analysis, and protein-protein interaction (PPI) networks were constructed to elucidate the molecular mechanisms of the co-DEGs. Finally, hub genes in the co-DEG network were identified, and correlation analysis was performed.We identified 8320 upregulated genes and 7651 downregulated genes from blood samples of COVID-19 patients and 368 upregulated genes and 240 downregulated genes from blood samples of thrombosis patients. The enriched cellular component terms were mainly related to cytosolic ribosomes and ribosomal subunits. The enriched molecular function terms were mainly related to structural constituents of ribosomes and electron transfer activity. Construction of the PPI network and identification of hub genes ultimately confirmed that RPS7, IGF1R, DICER1, ERH, MCTS1, and TNPO1 were jointly upregulated hub genes, and FLNA and PXN were jointly downregulated hub genes.The identification of novel potential biomarkers provides new options for treating COVID-19-related thrombosis and reducing the rate of severe COVID-19.
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