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Loss-of-Function FLNC Variants Are Associated With Arrhythmogenic Cardiomyopathy Phenotypes When Identified Through
Eric D Carruth1, Maria Qureshi2, Amro Alsaid2
1Department of Translational Data Science and Informatics (E.D.C., H.L.K., B.K.F., C.M.H.), Geisinger, Danville, PA.
Insights
Loss-of-function variants in the FLNC gene are linked to increased risks of arrhythmogenic cardiomyopathy and related heart conditions. Genomic screening for FLNC variants can identify actionable genetic conditions.
Area of Science:
- Genetics
- Cardiology
- Genomic Medicine
Background:
- The FLNC gene is implicated in arrhythmogenic cardiomyopathy, an actionable genetic condition.
- The association between FLNC loss-of-function (LOF) variants and disease phenotypes in unselected populations remains unclear.
Purpose of the Study:
- To investigate the association between FLNC loss-of-function (LOF) variants and arrhythmogenic cardiomyopathy-associated phenotypes in a large, unselected clinical cohort.
Main Methods:
- Identified rare FLNC LOF variants in 171,948 individuals using exome sequencing linked to health records.
- Analyzed associations between FLNC LOF variants and cardiomyopathy phenotypes, including diagnoses and cardiac evaluations.
Main Results:
- Sixty individuals (0.03%) carried FLNC LOF variants, showing significantly increased odds for dilated cardiomyopathy (OR, 4.9), supraventricular tachycardia (OR, 3.2), and left-dominant arrhythmogenic cardiomyopathy (OR, 4.2).
- Reduced left ventricular ejection fraction was observed in individuals with FLNC LOF variants (52% vs. 57%).
- At least 9% of individuals with FLNC LOF variants exhibited evidence of penetrant disease.
Conclusions:
- FLNC LOF variants are associated with an increased risk of ventricular dysfunction and arrhythmia in the general population.
- Genomic screening for FLNC variants is supported for identifying actionable secondary genetic findings.
Background:
The FLNC gene has recently garnered attention as a likely cause of arrhythmogenic cardiomyopathy, which is considered an actionable genetic condition. However, the association with disease in an unselected clinical population is unknown. We hypothesized that individuals with loss-of-function variants in FLNC (FLNCLOF) would have increased odds for arrhythmogenic cardiomyopathy-associated phenotypes versus variant-negative controls in the Geisinger MyCode cohort.
Methods:
We identified rare, putative FLNCLOF among 171 948 individuals with exome sequencing linked to health records. Associations with arrhythmogenic cardiomyopathy phenotypes from available diagnoses and cardiac evaluations were investigated.
Results:
Sixty individuals (0.03%; median age 58 years [47-70 interquartile range], 43% male) harbored 27 unique FLNCLOF. These individuals had significantly increased odds ratios for dilated cardiomyopathy (odds ratio, 4.9 [95% CI, 2.6-7.6]; P<0.001), supraventricular tachycardia (odds ratio, 3.2 [95% CI, 1.1-5.6]; P=0.048), and left-dominant arrhythmogenic cardiomyopathy (odds ratio, 4.2 [95% CI, 1.4-7.9]; P=0.03). Echocardiography revealed reduced left ventricular ejection fraction (52±13% versus 57±9%; P=0.001) associated with FLNCLOF. Overall, at least 9% of FLNCLOF patients demonstrated evidence of penetrant disease.
Conclusions:
FLNCLOF variants are associated with increased odds of ventricular arrhythmia and dysfunction in an unselected clinical population. These findings support genomic screening of FLNC for actionable secondary findings.
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