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Updated: Sep 8, 2025

A Simple, Robust, and High Throughput Single Molecule Flow Stretching Assay Implementation for Studying Transport of Molecules Along DNA
Published on: October 1, 2017
Nonlinear electrophoretic velocity of DNA in slitlike confinement
Michael Lamontagne1, Stephen Levy1
1Department of Physics, Applied Physics and Astronomy, Binghamton University, 4400 Vestal Parkway East, P.O. Box 6000, Binghamton, New York 13902-6000, USA.
Abstract:
We have applied zero-time-averaged alternating electric fields to DNA molecules in a cross-shaped nanofluidic slit. We observed a net drift of DNA molecules, the magnitude of which depends on the square of the electric field amplitude. From the rate of accumulation of DNA at the center of the device, we derive an estimate for the second-order electrophoretic mobility, μ_{2}. We observe that focusing is absent at a dipole rotation frequency >20 Hz, which suggests that μ_{2} depends on the frequency of the alternating fields. The observation of a nonzero μ_{2} raises the possibility of frequency-dependent electrophoretic DNA separation by length achievable in the absence of a sieving matrix.
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