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Ordered quantile normalization: a semiparametric transformation built for the cross-validation era.

Ryan A Peterson1,2, Joseph E Cavanaugh1

  • 1Department of Biostatistics, University of Iowa College of Public Health, Iowa City, IA, USA.

Journal of Applied Statistics
|June 16, 2022
PubMed
Summary
This summary is machine-generated.

Ordered Quantile (ORQ) normalization effectively transforms data to a normal distribution, outperforming other methods. This machine learning technique ensures consistent data preprocessing regardless of the original data distribution.

Keywords:
High-dimensional data analysismachine learningnormalizing transformationpredictive modelingpreprocessing

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Area of Science:

  • Machine Learning
  • Data Science
  • Statistical Modeling

Background:

  • Normalization is crucial for machine learning data preprocessing.
  • Classical normalization methods struggle with cross-validation and diverse data distributions.
  • Existing techniques are not consistently effective across various underlying data distributions.

Purpose of the Study:

  • Introduce Ordered Quantile (ORQ) normalization, a novel transformation method.
  • Develop a one-to-one transformation to map arbitrary distributions to a normal (Gaussian) distribution.
  • Evaluate ORQ normalization's effectiveness compared to existing methods.

Main Methods:

  • Developed Ordered Quantile (ORQ) normalization, a transformation guaranteeing normal distribution in the absence of ties.
  • Conducted a simulation study comparing ORQ with popular normalization techniques using known data generating distributions.
  • Utilized repeated cross-validation to identify optimal transformations when the underlying distribution is unknown.
  • Implemented and tested methods using the bestNormalize R package on car pricing data.

Main Results:

  • ORQ normalization consistently and effectively transforms data to a normal distribution across all tested underlying distributions.
  • ORQ was the only method demonstrating consistent effectiveness irrespective of the data's original distribution.
  • The bestNormalize R package facilitates the evaluation of multiple normalization transformations.

Conclusions:

  • Ordered Quantile (ORQ) normalization offers a robust and reliable solution for data preprocessing in machine learning.
  • ORQ normalization is a valuable tool for transforming data to a normal distribution, enhancing model performance.
  • The bestNormalize R package provides a practical framework for applying and comparing normalization techniques.