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Updated: Sep 7, 2025

User-friendly, High-throughput, and Fully Automated Data Acquisition Software for Single-particle Cryo-electron Microscopy
Published on: July 29, 2021
Automating ALCHEMI at the nano-scale using software compatible with PC-controlled transmission electron microscopy.
Akimitsu Ishizuka1,2, Masahiro Ohtsuka1,3, Shunsuke Muto1,3
1Department of Materials Physics, Graduate School of Engineering, Nagoya University, Chikusa-ku, Nagoya, 464-8603, Japan.
A new method enables atom location by channeling-enhanced microanalysis (ALCHEMI) on nanoscale areas as small as 30 nm. This advancement overcomes hardware limitations, allowing for more precise elemental analysis in smaller regions of crystalline samples.
Area of Science:
- Materials Science
- Analytical Chemistry
- Electron Microscopy
Background:
- Atom location by channeling-enhanced microanalysis (ALCHEMI) provides atom-site-specific elemental information in crystalline samples.
- High-angular-resolution electron-channeled X-ray/electron spectroscopy (HARECXS/HARECES) is a quantitative extension of ALCHEMI.
- Current automated methods are limited to analyzing regions of 1 µm or larger.
Purpose of the Study:
- To overcome the minimum analysis area limitation of current ALCHEMI techniques.
- To enable ALCHEMI and its derivative methods on nanoscale regions without hardware modification.
- To develop a more sophisticated and automated scheme for high-resolution elemental analysis.
Main Methods:
- Modification of the quantitative electron diffraction (QED) software plug-in within the Gatan Microscopy Suite.
- Development of a new scheme for QED to perform ALCHEMI using energy-dispersive X-ray spectroscopy (EDX) and/or electron energy-loss spectroscopy (EELS).
- Calibration and control of the electron probe for precise positioning during beam tilting.
Main Results:
- The modified QED enables automated ALCHEMI on areas as small as 30 nm.
- The new scheme allows for concurrent EDX and EELS analysis.
- The method is compatible with any PC-controlled commercial microscope without hardware changes.
Conclusions:
- The developed QED-based ALCHEMI method significantly reduces the minimum analysis area.
- This technique provides unprecedented nanoscale elemental site-specific analysis capabilities.
- The approach democratizes advanced analytical techniques for smaller sample areas.
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