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Related Experiment Video

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Exploring Parameter and Hyper-Parameter Spaces of Neuroscience Models on High Performance Computers With Learning to

Alper Yegenoglu1,2, Anand Subramoney3, Thorsten Hater1

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This study introduces Learning to Learn (L2L), a Python framework for efficiently exploring complex neuroscience model parameters using high-performance computing (HPC). L2L accelerates the discovery of critical model behaviors for advancing brain research.

Keywords:
connectivity generationhigh performance computinghyper-parameter optimizationmeta learningparameter explorationsimulation

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Area of Science:

  • Computational Neuroscience
  • Machine Learning
  • High-Performance Computing

Background:

  • Neuroscience models often have numerous parameters, with only specific regions yielding relevant dynamics.
  • Efficiently navigating these high-dimensional parameter spaces is crucial for advancing brain research.

Purpose of the Study:

  • To present Learning to Learn (L2L) as a flexible framework for parameter and hyper-parameter space exploration of neuroscience models.
  • To leverage high-performance computing (HPC) infrastructure for accelerated model analysis.

Main Methods:

  • Developed an open-source Python framework implementing the Learning to Learn (L2L) concept.
  • Utilized embarrassingly parallel execution on HPC for optimizing various neuroscience models.
  • Integrated built-in adaptive and efficient optimizer algorithms.

Main Results:

  • Demonstrated L2L's versatility across diverse neuroscience models, from single cells to whole-brain simulations.
  • Showcased L2L's ability to perform tasks such as reproducing empirical data and dynamic environment problem-solving.
  • Validated L2L with simulation engines including NEST, Arbor, TVB, OpenAIGym, and NetLogo.

Conclusions:

  • L2L provides an accessible and adaptable tool for efficient parameter space exploration in computational neuroscience.
  • The framework facilitates a deeper understanding of complex neural system dynamics on HPC infrastructure.