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Related Concept Videos

IR Spectroscopy: Hooke's Law Approximation of Molecular Vibration01:16

IR Spectroscopy: Hooke's Law Approximation of Molecular Vibration

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A covalently bonded heteronuclear diatomic molecule can be modeled as two vibrating masses connected by a spring. The vibrational frequency of the bond can be expressed using an equation derived from Hooke's law, which describes how the force applied to stretch or compress a spring is proportional to the displacement of the spring. In this case, the atoms behave like masses, and the bond acts like a spring.
According to Hooke's law, the vibrational frequency is directly proportional to...
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IR Spectroscopy: Molecular Vibration Overview01:24

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When Infrared (IR) radiation passes through a covalently bonded molecule, the bonds transition from lower to higher vibrational levels. The fundamental vibrational motions that result in infrared absorption can be classified as stretching or bending vibrations.
Stretching vibrations are vibrational motions that occur along the bond line, changing the bond length or distance between two bonded atoms. They are further distinguished as symmetric or asymmetric. In symmetric stretching, the...
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NMR Spectrometers: Radiofrequency Pulses and Pulse Sequences01:17

NMR Spectrometers: Radiofrequency Pulses and Pulse Sequences

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A pulse is a short burst of radio waves distributed over a range of frequencies that simultaneously excites all the nuclei in the sample. Upon passing a radio frequency pulse along the x-axis, the nuclei absorb energy corresponding to their Larmor frequencies and achieve resonance. This shifts the net magnetization vector from the z-axis toward the transverse plane. This angle of rotation of the magnetization vector, or the flip angle, is proportional to the duration and intensity of the pulse.
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IR Spectrum Peak Splitting: Symmetric vs Asymmetric Vibrations01:08

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Identical bonds within a polyatomic group can stretch symmetrically (in-phase) or asymmetrically (out-of-phase). Similar to hydrogen bonding, these vibrations also influence the shape of the IR peak. Generally, asymmetric stretching frequencies are higher than symmetric stretching frequencies. For example, primary amines exhibit two distinct IR peaks between 3300–3500 cm−1 corresponding to the symmetric and asymmetric N-H stretching, while secondary amines exhibit a single...
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Suppose one wants to test independence between the two variables of a contingency table. The values in the table constitute the observed frequencies of the dataset. But how does one determine the expected frequency of the dataset? One of the important assumptions is that the two variables are independent, which means the variables do not influence each other. For independent variables, the statistical probability of any event involving both variables is calculated by multiplying the individual...
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UV–Vis Spectroscopy: Molecular Electronic Transitions01:16

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In Ultraviolet–Visible (UV–Vis) spectroscopy, the absorption of electromagnetic radiation is used to probe the electronic structure of molecules. This technique provides insights into molecular electronic transitions, particularly the movement of electrons between different molecular orbitals. Radiation is absorbed if the energy of the electromagnetic radiation passing through the molecule is precisely equal to the energy difference between the excited and ground states. During this...
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Updated: Sep 7, 2025

Vibrational Spectra of a N719-Chromophore/Titania Interface from Empirical-Potential Molecular-Dynamics Simulation, Solvated by a Room Temperature Ionic Liquid
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VIBFREQ1295: A New Database for Vibrational Frequency Calculations.

Juan C Zapata Trujillo1, Laura K McKemmish1

  • 1School of Chemistry, University of New South Wales, 2052 Sydney, Australia.

The Journal of Physical Chemistry. A
|June 20, 2022
PubMed
Summary
This summary is machine-generated.

A new database, VIBFREQ1295, aids in benchmarking computational vibrational frequencies for astrochemistry. Using region-specific scaling factors improves accuracy in predicting fundamental frequencies from harmonic calculations.

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Area of Science:

  • Computational quantum chemistry
  • Astrochemistry
  • Spectroscopy

Background:

  • High-throughput vibrational spectral data for astrochemistry often uses harmonic frequency calculations.
  • Lack of established model chemistry recommendations necessitates benchmarking.
  • Accurate prediction of fundamental frequencies requires accounting for anharmonicity.

Purpose of the Study:

  • To present VIBFREQ1295, a new database for vibrational frequency calculations.
  • To provide a benchmark for computational quantum chemistry methods.
  • To establish reliable scaling factors for predicting fundamental frequencies.

Main Methods:

  • Compiled 1295 experimental fundamental frequencies and computed 141 molecules' harmonic frequencies using CCSD(T)(F12*)/cc-pVDZ-F12.
  • Analyzed chemical space representation for common organic functional groups and vibrational modes.
  • Determined optimal scaling factors for different frequency regions.

Main Results:

  • A single global scaling factor yielded median differences of 15.9(5) cm⁻¹.
  • Region-specific scaling factors (below 1000, 1000-2000, above 2000 cm⁻¹) significantly improved accuracy, with median differences of 7.5(5) cm⁻¹.
  • Established a lower bound for the performance of scaled harmonic frequency calculations.

Conclusions:

  • VIBFREQ1295 serves as a robust database for benchmarking vibrational frequency calculations.
  • The database can train machine-learning models for vibrational spectra prediction.
  • Provides a reference for detailed spectroscopic modeling.