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Yeast As a Chassis for Developing Functional Assays to Study Human P53
Published on: August 4, 2019
A common pathway to cancer: Oncogenic mutations abolish p53 oscillations
Lingyun Xiong1, Alan Garfinkel2
1Department of Stem Cell Biology and Regenerative Medicine, University of Southern California, Los Angeles, CA 90007 USA; Department of Quantitative and Computational Biology, University of Southern California, Los Angeles, CA, 90007, USA; Ludwig Institute for Cancer Research, University of Oxford, Oxford, OX3 7DQ, UK.
Abstract:
The tumor suppressor p53 oscillates in response to DNA double-strand breaks, a behavior that has been suggested to be essential to its anti-cancer function. Nearly all human cancers have genetic alterations in the p53 pathway; a number of these alterations have been shown to be oncogenic by experiment. These alterations include somatic mutations and copy number variations as well as germline polymorphisms. Intriguingly, they exhibit a mixed pattern of interactions in tumors, such as co-occurrence, mutual exclusivity, and paradoxically, mutual antagonism. Using a differential equation model of p53-Mdm2 dynamics, we employ Hopf bifurcation analysis to show that these alterations have a common mode of action, to abolish the oscillatory competence of p53, thereby, we suggest, impairing its tumor suppressive function. In this analysis, diverse genetic alterations, widely associated with human cancers clinically, have a unified mechanistic explanation of their role in oncogenesis.
Insights
Genetic alterations in human cancers abolish the essential DNA damage-induced oscillations of tumor suppressor p53, impairing its anti-cancer function. This study unifies the mechanistic explanation for diverse cancer-associated p53 pathway alterations.
Area of Science:
- Molecular Biology
- Cancer Research
- Systems Biology
Background:
- The tumor suppressor p53 plays a critical role in preventing cancer.
- p53 exhibits oscillations in response to DNA double-strand breaks, a behavior linked to its anti-cancer function.
- Genetic alterations in the p53 pathway are prevalent in human cancers and can be oncogenic.
Purpose of the Study:
- To investigate the common mechanistic basis for diverse genetic alterations in the p53 pathway observed in human cancers.
- To determine how these alterations affect the oscillatory behavior of p53 in response to DNA damage.
Main Methods:
- Utilized a differential equation model to simulate p53-Mdm2 dynamics.
- Employed Hopf bifurcation analysis to assess the impact of genetic alterations on p53 oscillations.
Main Results:
- Demonstrated that various cancer-associated genetic alterations commonly abolish the oscillatory competence of p53.
- Showed that these alterations impair the tumor suppressive function of p53 by disrupting its normal response to DNA damage.
Conclusions:
- Diverse genetic alterations in the p53 pathway share a unified mechanism of action: disruption of p53 oscillations.
- This disruption provides a mechanistic explanation for the oncogenic role of these alterations in human cancers.
- Understanding this unified mechanism can inform cancer diagnosis and therapeutic strategies targeting the p53 pathway.
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