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Predicting the Effectiveness of Population Replacement Strategy Using Mathematical Modeling
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Revisiting moment-closure methods with heterogeneous multiscale population models.

Davin Lunz1, J Frédéric Bonnans2, Jakob Ruess1

  • 1Inria Paris, 2 rue Simone Iff, 75012 Paris, France; Institut Pasteur, 28 rue du Docteur Roux, 75015 Paris, France.

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|June 26, 2022
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Summary

Stochasticity in single cells creates population heterogeneity, impacting chemical process control. Moment-closure approximations offer a computationally efficient solution for multiscale models, even outperforming complex methods in specific applications.

Keywords:
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Area of Science:

  • Multiscale modeling
  • Chemical kinetics
  • Systems biology

Background:

  • Single-cell stochasticity drives population heterogeneity in genetically identical cells.
  • This heterogeneity leads to diverse behaviors like varied growth and responses, complicating population dynamics.
  • Accurate modeling of these multiscale processes is crucial but computationally expensive.

Purpose of the Study:

  • To develop computationally efficient approximations for multiscale population models.
  • To investigate moment-closure techniques for systems with single-cell stochasticity and population-level interactions.
  • To address challenges in applying moment-closure methods to population models.

Main Methods:

  • Order-reduction approximations based on distribution moments.
  • Extension of single-cell moment-closure techniques to population models.
  • Evaluation of closure methods for optimal control in a microbial consortium model.

Main Results:

  • Simple moment-closure techniques can yield non-physical trajectories.
  • Despite limitations, simple closures demonstrated superior accuracy, efficiency, and robustness in optimal bioproduction control.
  • The study highlights the trade-offs and specific advantages of different closure methods.

Conclusions:

  • Moment-closure approximations provide a viable approach to manage computational complexity in multiscale stochastic models.
  • The choice of closure method significantly impacts model performance and the ability to solve optimization problems.
  • This work offers insights into optimizing bioproduction through effective multiscale modeling and control strategies.