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Targeted Next-generation Sequencing and Bioinformatics Pipeline to Evaluate Genetic Determinants of Constitutional Disease
Published on: April 4, 2018
Comparison of two families with and without ataxia harboring novel variants in PRKCG
Yui Tada1, Kodai Kume2, Soma Noguchi3
1Department of Molecular Epidemiology, Research Institute for Radiation Biology and Medicine, Hiroshima University, 1-2-3 Kasumi, Minami-ku, Hiroshima, 734-8553, Japan.
Abstract:
Spinocerebellar ataxia type 14 (SCA14) is an autosomal dominant SCA caused by variants of the PRKCG encoding protein kinase C gamma (PKCγ). Although the toxic gain-of-function mechanism is the main cause of SCA14, its molecular pathophysiology remains unclear. To elucidate the molecular pathogenesis of SCA14, we analyzed two families with the variants in PRKCG. Clinical symptoms and neurological findings of two Japanese families were evaluated by neurologists. Exome sequencing was performed using the BGI platform. GFP-tagged PRKCGs harboring the identified variants were transfected into the HeLa cells, and aggregation of PKCγ was analyzed using confocal laser microscopy. Solubility of PKCγ was evaluated by assessing the proportion of insoluble fraction present in1% Triton-X. Patients in family 1 presented with only cerebellar atrophy without ataxia; however, patients in family 2 exhibited cerebellar ataxia, dystonia, and more severe cerebellar atrophy than those in family 1. Exome sequencing identified two novel missense variants of PRKCG:c.171 G > C,p.W57C (family 1), and c.400 T > C,p.C134R (family 2). Both the mutant PKCγ aggregated in the cytoplasm. Although the solubility of PKCγ of the C134R variant was lower than that of the wild-type, PKCγ of W57C retained its solubility. In conclusion, we identified two novel variants of PRKCG. The difference in severity between the two families may be due to the difference in solubility changes observed between the two variants. Decreased solubility of the PKCγ may play an important role in the pathogenesis of SCA14.
Insights
Two novel protein kinase C gamma (PKCγ) variants cause spinocerebellar ataxia 14 (SCA14). Reduced PKCγ solubility may drive disease pathogenesis, explaining varying patient symptom severity.
Area of Science:
- Neurogenetics
- Molecular Biology
- Cell Biology
Background:
- Spinocerebellar ataxia type 14 (SCA14) is an autosomal dominant neurodegenerative disorder.
- It is caused by variants in the PRKCG gene, encoding protein kinase C gamma (PKCγ).
- The precise molecular mechanisms underlying SCA14 pathogenesis remain incompletely understood.
Purpose of the Study:
- To investigate the molecular pathogenesis of SCA14 by analyzing novel PRKCG variants.
- To correlate genotype with clinical phenotypes in affected families.
Main Methods:
- Clinical evaluation of two Japanese families with suspected SCA14.
- Whole exome sequencing to identify PRKCG variants.
- Cellular analysis of mutant PKCγ aggregation and solubility using GFP tagging, confocal microscopy, and Triton-X fractionation.
Main Results:
- Identified two novel missense PRKCG variants: c.171G>C (p.W57C) and c.400T>C (p.C134R).
- Both variants led to cytoplasmic aggregation of PKCγ in HeLa cells.
- The p.C134R variant showed reduced solubility compared to wild-type, while p.W57C retained solubility.
- Clinical presentation varied, with family 2 (p.C134R) exhibiting more severe ataxia and dystonia than family 1 (p.W57C).
Conclusions:
- Two novel PRKCG variants associated with SCA14 were identified.
- Differential solubility of mutant PKCγ may explain the varying clinical severity between families.
- Decreased PKCγ solubility is implicated as a key factor in SCA14 pathogenesis.
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