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Updated: Sep 6, 2025

Characterizing RNA Modifications in Single Neurons Using Mass Spectrometry
Published on: April 21, 2022
Mitochondrial RNA modifications shape metabolic plasticity in metastasis
Sylvain Delaunay1, Gloria Pascual2, Bohai Feng3,4
1German Cancer Research Center - Deutsches Krebsforschungszentrum (DKFZ), Heidelberg, Germany.
Abstract:
Aggressive and metastatic cancers show enhanced metabolic plasticity1, but the precise underlying mechanisms of this remain unclear. Here we show how two NOP2/Sun RNA methyltransferase 3 (NSUN3)-dependent RNA modifications-5-methylcytosine (m5C) and its derivative 5-formylcytosine (f5C) (refs.2-4)-drive the translation of mitochondrial mRNA to power metastasis. Translation of mitochondrially encoded subunits of the oxidative phosphorylation complex depends on the formation of m5C at position 34 in mitochondrial tRNAMet. m5C-deficient human oral cancer cells exhibit increased levels of glycolysis and changes in their mitochondrial function that do not affect cell viability or primary tumour growth in vivo; however, metabolic plasticity is severely impaired as mitochondrial m5C-deficient tumours do not metastasize efficiently. We discovered that CD36-dependent non-dividing, metastasis-initiating tumour cells require mitochondrial m5C to activate invasion and dissemination. Moreover, a mitochondria-driven gene signature in patients with head and neck cancer is predictive for metastasis and disease progression. Finally, we confirm that this metabolic switch that allows the metastasis of tumour cells can be pharmacologically targeted through the inhibition of mitochondrial mRNA translation in vivo. Together, our results reveal that site-specific mitochondrial RNA modifications could be therapeutic targets to combat metastasis.
Insights
Cancer cells use specific RNA modifications in mitochondria to fuel metastasis. Targeting mitochondrial mRNA translation offers a new therapeutic strategy to inhibit cancer spread.
Area of Science:
- Molecular Biology
- Cancer Research
- Metabolic Plasticity
Background:
- Metastatic cancers exhibit enhanced metabolic plasticity, but the mechanisms are not fully understood.
- RNA modifications play crucial roles in cellular processes, including gene expression.
Purpose of the Study:
- To investigate the role of NOP2/Sun RNA methyltransferase 3 (NSUN3)-dependent RNA modifications in driving cancer metastasis.
- To elucidate the mechanisms by which mitochondrial mRNA translation fuels cancer cell invasion and dissemination.
Main Methods:
- Analysis of 5-methylcytosine (m5C) and 5-formylcytosine (f5C) modifications in mitochondrial tRNA.
- Assessment of cancer cell viability, glycolysis, mitochondrial function, and metastasis in m5C-deficient cells.
- Identification of a mitochondria-driven gene signature in head and neck cancer patients.
Main Results:
- NSUN3-dependent m5C modification at position 34 in mitochondrial tRNA is essential for oxidative phosphorylation and metastasis.
- m5C-deficient oral cancer cells show impaired metabolic plasticity and reduced metastasis, despite normal primary tumor growth.
- CD36-dependent tumor cells require mitochondrial m5C for invasion and dissemination.
- A mitochondria-driven gene signature predicts metastasis and progression in head and neck cancer.
Conclusions:
- Mitochondrial RNA modifications, specifically m5C, are critical regulators of cancer cell metabolic plasticity and metastasis.
- Targeting mitochondrial mRNA translation presents a potential therapeutic strategy to inhibit cancer metastasis.
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