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A Founder Mutation in the POMC 5'-UTR Causes Proopiomelanocortin Deficiency Through Splicing-Mediated Decrease of
Iuliia Viakhireva1, Natalia Kalinchenko2, Evgeny Vasilyev2
1Department of Endocrine Genetics, Research Centre for Medical Genetics, 115522 Moscow, Russian Federation.
Context:
The syndrome of adrenal insufficiency, obesity, and red hair is a rare autosomal recessive disorder. The majority of disease-causing variants associated with the syndrome are located in the coding region of the POMC gene.
Objective:
This work describes 7 unrelated patients who shared a novel homozygous mutation in the 5'-untranslated region (UTR) of the POMC gene and functionally characterize this novel variant.
Methods:
Whole-exome sequencing (WES) with autozygosity mapping, Sanger sequencing, model expression system studies, and RNA sequencing were used for identification of the disease-causing variant and its subsequent functional characterization. Seven unrelated patients of the Perm Tatar ethnic group presented with hypoglycemia and excessive weight gain, low plasma adrenocorticotropin, and cortisol. Five of 7 children had red hair; 6 of 7 patients also showed signs of bronchial obstruction.
Results:
WES showed shared autozygosity regions overlapping the POMC gene. Sanger sequencing of the POMC 5'-UTR detected a homozygous variant chr2:25391366C > T (hg19) at the splice donor site of intron 1. As demonstrated by the model expression system, the variant led to a significant decrease in the POMC messenger RNA level. Analyses of the patients' haplotypes were suggestive of the founder effect. We estimate that the mutation must have occurred at least 4.27 generations ago (95% CI, 0.86-7.67).
Conclusion:
This report presents a new molecular mechanism of POMC deficiency and contributes to the information on phenotypic variability in patients with this disorder.
Insights
A rare POMC gene mutation in the 5'-untranslated region causes adrenal insufficiency, obesity, and red hair. This study identifies a novel variant and its molecular mechanism in seven patients.
Area of Science:
- Genetics
- Endocrinology
- Rare Diseases
Background:
- Adrenal insufficiency, obesity, and red hair is a rare autosomal recessive disorder.
- Most known disease-causing variants are in the coding region of the POMC gene.
Purpose of the Study:
- To describe and functionally characterize a novel homozygous mutation in the 5 -untranslated region (UTR) of the POMC gene.
- To investigate a new molecular mechanism for POMC deficiency.
Main Methods:
- Whole-exome sequencing (WES) with autozygosity mapping.
- Sanger sequencing, model expression systems, and RNA sequencing.
- Clinical evaluation of seven unrelated patients with hypoglycemia, excessive weight gain, and hormonal deficiencies.
Main Results:
- A novel homozygous POMC 5 -UTR variant (chr2:25391366C>T) at the intron 1 splice donor site was identified in seven patients.
- The variant significantly decreased POMC messenger RNA levels.
- Evidence suggests a founder effect for this mutation in the Perm Tatar ethnic group.
Conclusions:
- This report presents a new molecular mechanism for POMC deficiency.
- The findings contribute to understanding the phenotypic variability of this rare disorder.
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