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Updated: Sep 5, 2025

Synthesis and Mass Spectrometry Analysis of Oligo-peptoids
Published on: February 21, 2018
Total Synthesis and Structural Elucidation of Ogipeptins.
Shingo Takiguchi1, Yuki Hirota-Takahata1, Takahide Nishi2
1Daiichi Sankyo RD Novare Company, Ltd., 1-16-13 Kitakasai, Edogawa-ku, Tokyo 134-8630, Japan.
Researchers achieved the first total synthesis of ogipeptin A. They elucidated its absolute configurations using the Marfey
Area of Science:
- Organic Chemistry
- Chemical Synthesis
- Structural Elucidation
Background:
- Ogiveptins are complex natural products with potential biological activities.
- Determining the absolute configuration of chiral molecules is crucial for understanding their function.
- Previous studies had not fully elucidated the stereochemistry of ogipeptins.
Purpose of the Study:
- To achieve the first total synthesis of ogipeptin A.
- To determine the absolute configurations of the β-hydroxy-α,γ-diaminobutyric acid (β-OH Dab) residues within ogipeptins.
- To confirm the structure of natural ogipeptin A through synthesis.
Main Methods:
- Solid-phase total synthesis of ogipeptin A diastereomers.
- Marfey's method for determining absolute configurations of amino acid derivatives.
- Analysis of analytical data (e.g., NMR, MS) for structural confirmation.
Main Results:
- Successful total synthesis of ogipeptin A was accomplished.
- The absolute configurations of three β-OH Dab units in ogipeptins were elucidated using Marfey's method.
- One synthesized diastereomer precisely matched the analytical data of natural ogipeptin A.
Conclusions:
- The absolute configurations of ogipeptins have been definitively established.
- The synthetic route provides a reliable method for accessing ogipeptin A and its analogs.
- This work lays the foundation for further biological investigations of ogipeptins.
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