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Updated: Sep 5, 2025

Fully Processed Recombinant KRAS4b: Isolating and Characterizing the Farnesylated and Methylated Protein
Published on: January 16, 2020
Mutant KRAS-Associated Proteome Is Mainly Controlled by Exogenous Factors
Patrícia Dias Carvalho1,2,3, Flávia Martins1,2,4, Joana Carvalho1,2
1Instituto de Investigação e Inovação em Saúde (i3S), Rua Alfredo Allen 208, 4200-135 Porto, Portugal.
Abstract:
Understanding how mutant KRAS signaling is modulated by exogenous stimuli is of utmost importance to elucidate resistance mechanisms underlying pathway inhibition failure, and to uncover novel therapeutic targets for mutant KRAS patients. Hence, aiming at perceiving KRAS-autonomous versus -non autonomous mechanisms, we studied the response of two mutant KRAS colorectal cancer cell lines (HCT116 and LS174T) upon KRAS silencing and treatment with rhTGFβ1-activated fibroblasts secretome. A proteomic analysis revealed that rhTGFβ1-activated fibroblast-secreted factors triggered cell line-specific proteome alterations and that mutant KRAS governs 43% and 38% of these alterations in HCT116 and LS174T cells, respectively. These KRAS-dependent proteins were localized and displayed molecular functions that were common to both cell lines (e.g., extracellular exosome, RNA binding functions). Moreover, 67% and 78% of the KRAS-associated proteome of HCT116 and LS174T cells, respectively, was controlled in a KRAS-non-autonomous manner, being dependent on fibroblast-secreted factors. In HCT116 cells, KRAS-non-autonomously controlled proteins were mainly involved in proteoglycans in cancer, p53, and Rap1 signaling pathways; whereas in LS174T cells, they were associated with substrate adhesion-dependent cell-spreading and involved in metabolic processes. This work highlights the context-dependency of KRAS-associated signaling and reinforces the importance of integrating the tumor microenvironment in the study of KRAS-associated effects.
Insights
Mutant KRAS signaling is influenced by the tumor microenvironment, impacting colorectal cancer cell responses. Understanding these KRAS-non-autonomous mechanisms is key for developing new cancer therapies.
Area of Science:
- Oncology
- Molecular Biology
- Cancer Signaling
Background:
- Mutant KRAS signaling is crucial in colorectal cancer, but its modulation by external factors and resistance mechanisms remain incompletely understood.
- Identifying KRAS-autonomous versus KRAS-non-autonomous signaling is vital for discovering new therapeutic targets in mutant KRAS cancers.
Purpose of the Study:
- To investigate how mutant KRAS signaling in colorectal cancer cells responds to fibroblast-secreted factors.
- To differentiate KRAS-autonomous and KRAS-non-autonomous mechanisms in response to tumor microenvironment stimuli.
Main Methods:
- Proteomic analysis of two mutant KRAS colorectal cancer cell lines (HCT116 and LS174T) after KRAS silencing and treatment with rhTGFβ1-activated fibroblast secretome.
- Assessment of KRAS-dependent and fibroblast-dependent proteome alterations.
Main Results:
- Fibroblast-secreted factors induced cell line-specific proteome changes, with mutant KRAS governing a significant portion (43% in HCT116, 38% in LS174T).
- A majority of KRAS-associated proteins were regulated in a KRAS-non-autonomous manner, dependent on fibroblast factors (67% in HCT116, 78% in LS174T).
- KRAS-non-autonomous pathways differed between cell lines, involving proteoglycans in cancer, p53, and Rap1 signaling (HCT116) or cell-spreading and metabolism (LS174T).
Conclusions:
- Mutant KRAS signaling is highly context-dependent, influenced significantly by the tumor microenvironment.
- Therapeutic strategies for mutant KRAS cancers should consider the tumor microenvironment's role in modulating signaling pathways.
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