WormBase single-cell tools
Eduardo da Veiga Beltrame1, Valerio Arnaboldi1, Paul W Sternberg1
1Division of Biology and Biological Engineering, Caltech, Pasadena, CA 91125, USA.
Bioinformatics Advances
|July 11, 2022
Abstract
Unassigned:
We present two web apps for interactively performing common tasks with single-cell RNA sequencing data: scdefg for differential expression and wormcells-viz for visualization of gene expression. We deployed these tools with public Caenorhabditis elegans datasets curated by WormBase at https://single-cell.wormbase.org. Source code for deploying these tools with other datasets is available at https://github.com/WormBase/scdefg and https://github.com/WormBase/wormcells-viz.
Supplementary Information:
Supplementary data are available at Bioinformatics Advances online.
