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Transcriptome Analysis Reveals the Immune Infiltration Profiles in Cervical Cancer and Identifies KRT23 as an
Xia Li1, Yan Cheng1, Yanmei Cheng2
1Gynecological Oncology Radiotherapy Ward, The First Affiliated Hospital of Zhengzhou University, Zhengzhou, China.
Abstract:
Cervical cancer (CC) is one of the most common malignancies in women worldwide. Dismal prognosis rates have been associated with conventional therapeutic approaches, emphasizing the need for new strategies. Recently, immunotherapy has been used to treat various types of solid tumors, and different subtypes of the tumor microenvironment (TME) are associated with diverse responses to immunotherapy. Accordingly, understanding the complexity of the TME is pivotal for immunotherapy. Herein, we used two methods, "ssGSEA" and "xCell," to identify the immune profiles in CC and comprehensively assess the relationship between immune cell infiltration and genomic alterations. We found that more adaptive immune cells were found infiltrated in tumor tissues than in normal tissues, whereas the opposite was true for innate cells. Consensus clustering of CC samples based on the number of immune cells identified four clusters with different survival and immune statuses. Then, we subdivided the above four clusters into "hot" and "cold" tumors, where hot tumors exhibited higher immune infiltration and longer survival time. Enrichment analyses of differentially expressed genes (DEGs) revealed that the number of activated immune signaling pathways was higher in hot tumors than that in cold tumors. Keratin, type I cytoskeletal 23 (KRT23), was upregulated in cold tumors and negatively correlated with immune cell infiltration. In vitro experiments, real-time reverse transcription-quantitative polymerase chain reaction, cytometric bead arrays, and ELISA revealed that knockdown of KRT23 expression could promote the secretion of C-C motif chemokine ligand-5 and promote the recruitment of CD8+ T cells. We also constructed a model based on DEGs that exhibited a high predictive power for the survival of CC patients. Overall, our study provides deep insights into the immune cell infiltration patterns of CC. Moreover, KRT23 has huge prospects for application as an immunotherapeutic target. Finally, our model demonstrated a good predictive power for the prognosis of CC patients and may guide clinicians during immunotherapy.
Insights
This study reveals distinct immune cell infiltration patterns in cervical cancer (CC), identifying Keratin 23 (KRT23) as a potential immunotherapy target. A predictive model for CC patient survival was also developed.
Area of Science:
- Oncology
- Immunology
- Genomics
Background:
- Cervical cancer (CC) poses a significant global health challenge with limited conventional treatment efficacy.
- Immunotherapy effectiveness in solid tumors is influenced by the tumor microenvironment (TME).
- Understanding CC's TME is crucial for developing novel therapeutic strategies.
Purpose of the Study:
- To characterize immune cell infiltration in cervical cancer.
- To investigate the relationship between immune cell infiltration and genomic alterations.
- To identify potential therapeutic targets and prognostic biomarkers for CC.
Main Methods:
- Utilized ssGSEA and xCell for immune profiling of CC tissues.
- Performed consensus clustering to categorize CC samples based on immune cell infiltration.
- Conducted enrichment analyses of differentially expressed genes (DEGs) and in vitro experiments.
Main Results:
- CC tissues showed higher adaptive and lower innate immune cell infiltration compared to normal tissues.
- Four distinct immune clusters were identified, with 'hot' tumors demonstrating greater immune infiltration and improved survival.
- Keratin 23 (KRT23) was upregulated in 'cold' tumors and its knockdown promoted CD8+ T cell recruitment.
Conclusions:
- CC exhibits complex immune infiltration patterns, differentiating 'hot' and 'cold' tumors.
- KRT23 presents a promising target for CC immunotherapy by enhancing immune cell infiltration.
- A DEG-based model shows high predictive power for CC patient prognosis, potentially guiding clinical immunotherapy decisions.
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