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Transcription Elongation Factors02:35

Transcription Elongation Factors

11.1K
Transcription elongation is a dynamic process that alters depending upon the sequence heterogeneity of the DNA being transcribed. Hence, it is not surprising that the elongation complex's composition also varies along the way while transcribing a gene.
The transcription elongation is regulated via pausing of RNA polymerase on several occasions during transcription. In bacteria, these halts are necessary because the transcription of DNA into mRNA is coupled to the translation of that mRNA...
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Transcription Initiation01:47

Transcription Initiation

16.7K
Initiation is the first step of transcription in eukaryotes. Prokaryotic RNA Polymerase (RNAP) can bind to the template DNA and start transcribing. On the other hand, transcription in eukaryotes requires additional proteins, called transcription factors, to first bind to the promoter region in the DNA template. This binding helps recruit the specific RNAP that can assemble on the DNA and start transcription.
The promoters and enhancers and their accessory proteins allow tight regulation of...
16.7K
Bacterial Transcription01:53

Bacterial Transcription

29.3K
RNA polymerase (RNAP) carries out DNA-dependent RNA synthesis in both bacteria and eukaryotes. Bacteria do not have a membrane-bound nucleus. So, transcription and translation occur simultaneously, on the same DNA template.
Transcription can be divided into three main stages, each involving distinct DNA sequences to guide the polymerase. These are:
29.3K
Transcription in Prokaryotes01:28

Transcription in Prokaryotes

227
Transcription is a highly regulated process that converts genetic information into RNA molecules. The transcription cycle is divided into three key stages: initiation, elongation, and termination, each driven by specific molecular mechanisms.Initiation of TranscriptionIn bacteria, transcription begins when the RNA polymerase core enzyme associates with a sigma factor to form a holoenzyme. For example, the E. coli sigma factor called σ70 forms a holoenzyme, which recognizes the -10 (Pribnow...
227
Transcription Attenuation in Prokaryotes02:42

Transcription Attenuation in Prokaryotes

15.9K
Transcriptional attenuation occurs when RNA transcription is prematurely terminated due to the formation of a terminator mRNA hairpin structure.  Bacteria use these hairpins to regulate the transcription process and control the synthesis of several amino acids including histidine, lysine, threonine, and phenylalanine. Transcription attenuation takes place in the non-coding regions of mRNA.
There are several different mechanisms used to attenuate transcription. In ribosome mediated...
15.9K
RNA Polymerase II Accessory Proteins02:36

RNA Polymerase II Accessory Proteins

9.4K
Proteins that regulate transcription can do so either via direct contact with RNA Polymerase or through indirect interactions facilitated by adaptors, mediators, histone-modifying proteins, and nucleosome remodelers. Direct interactions to activate transcription is seen in bacteria as well as in some eukaryotic genes. In these cases, upstream activation sequences are adjacent to the promoters, and the activator proteins interact directly with the transcriptional machinery. For example, in...
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Related Experiment Video

Updated: Sep 5, 2025

Artificial RNA Polymerase II Elongation Complexes for Dissecting Co-transcriptional RNA Processing Events
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Artificial RNA Polymerase II Elongation Complexes for Dissecting Co-transcriptional RNA Processing Events

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Structural advances in transcription elongation.

Abdallah A Mohamed1, Roberto Vazquez Nunez2, Seychelle M Vos3

  • 1Massachusetts Institute of Technology, Department of Biology, 31 Ames St., Cambridge, MA 02142, USA. Electronic address: https://twitter.com/AMohamed_98.

Current Opinion in Structural Biology
|July 11, 2022
PubMed
Summary

Recent structural studies reveal how RNA polymerases transition into productive elongation. These findings illuminate transcriptional pausing and interactions with cellular machinery, advancing our understanding of gene expression.

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Area of Science:

  • Molecular Biology
  • Structural Biology
  • Genetics

Background:

  • Transcription is the fundamental process of gene expression, initiated by RNA polymerases.
  • The elongation phase follows initiation, preceding transcription termination.
  • Recent advancements have enabled structural determination of transcription elongation complexes.

Purpose of the Study:

  • To review recent structural insights into transcription elongation complexes.
  • To highlight the roles of transcription elongation factors.
  • To identify future research directions in transcription biology.

Main Methods:

  • Review of recently determined protein structures.
  • Analysis of structural data from bacterial and eukaryotic systems.
  • Integration of structural findings with functional data.

Main Results:

  • Structures reveal the molecular basis of transcriptional pausing.
  • Insights into RNA polymerase interactions with the ribosome and spliceosome.
  • Understanding the transition from initiation to productive elongation.

Conclusions:

  • Structural biology has provided key insights into transcription elongation.
  • Further research is needed to fully elucidate dynamic processes.
  • Future studies will focus on elongation factors and complex interactions.