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Updated: Sep 5, 2025

JUMPn: A Streamlined Application for Protein Co-Expression Clustering and Network Analysis in Proteomics
Published on: October 19, 2021
Network structure from a characterization of interactions in complex systems
Thorsten Rings1,2, Timo Bröhl3,4, Klaus Lehnertz5,6,7
1Department of Epileptology, University Hospital Bonn, Venusberg Campus 1, 53127, Bonn, Germany. thorsten.rings@uni-bonn.de.
Abstract:
Many natural and man-made complex dynamical systems can be represented by networks with vertices representing system units and edges the coupling between vertices. If edges of such a structural network are inaccessible, a widely used approach is to identify them with interactions between vertices, thereby setting up a functional network. However, it is an unsolved issue if and to what extent important properties of a functional network on the global and the local scale match those of the corresponding structural network. We address this issue by deriving functional networks from characterizing interactions in paradigmatic oscillator networks with widely-used time-series-analysis techniques for various factors that alter the collective network dynamics. Surprisingly, we find that particularly key constituents of functional networks-as identified with betweenness and eigenvector centrality-coincide with ground truth to a high degree, while global topological and spectral properties-clustering coefficient, average shortest path length, assortativity, and synchronizability-clearly deviate. We obtain similar concurrences for an empirical network. Our findings are of relevance for various scientific fields and call for conceptual and methodological refinements to further our understanding of the relationship between structure and function of complex dynamical systems.
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