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Updated: Sep 5, 2025

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mirMachine: A One-Stop Shop for Plant miRNA Annotation
Published on: May 1, 2021
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Detecting MicroRNAs in Plant Genomes with miRkwood
Sylvain Legrand1, Isabelle Guigon2, Hélène Touzet3
1Univ. Lille, CNRS, UMR 8198, Evo-Eco-Paleo, Lille, France.
Methods in Molecular Biology (Clifton, N.J.)
|July 11, 2022
Abstract:
We present miRkwood, a comprehensive software tool developed to identify microRNAs and their precursor in plant genomes, with or without small-RNA-seq sequencing data. We describe how to install the software, how to set up and run it, and how to explore and analyse the results: genomic annotations, secondary structure of the precursor, alignments, reads distribution.

