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Updated: Sep 5, 2025

Discrimination of Seven Immune Cell Subsets by Two-fluorochrome Flow Cytometry
Published on: March 5, 2019
Using Full-Spectrum Flow Cytometry to Phenotype Memory T and NKT Cell Subsets with Optimized Tissue-Specific
Kathryn Farrand1, Lauren E Holz2, Laura Ferrer-Font1,3
1Malaghan Institute of Medical Research, Wellington, New Zealand.
Optimized protocols for processing mouse tissues and phenotyping immune cells using full-spectrum flow cytometry are presented. These methods ensure accurate analysis of memory T cells and natural killer T (NKT) cells, including tissue-resident memory T (TRM) cells.
Area of Science:
- Immunology
- Cell Biology
- Analytical Chemistry
Background:
- Full-spectrum flow cytometry is increasingly utilized for complex immune cell analysis.
- Standardized protocols are crucial for accurate panel design and ex vivo tissue analysis.
- Understanding tissue-resident immune cells requires optimized sample preparation.
Purpose of the Study:
- To provide optimized protocols for tissue processing and phenotyping of immune cells.
- To enable accurate analysis of memory T cells and natural killer T (NKT) cell subsets.
- To facilitate the study of tissue-resident memory T (TRM) cells in various organs.
Main Methods:
- Developed optimized protocols for processing liver, lung, spleen, and lymph node tissues from mice.
- Designed a 21-color antibody panel for comprehensive immune cell phenotyping.
- Utilized full-spectrum flow cytometry for high-resolution analysis of cell subsets.
Main Results:
- Established reliable methods for isolating and analyzing memory T and NKT cell populations.
- Demonstrated the importance of controlled processing temperatures, especially for liver TRM cells.
- Successfully identified various memory T cell subsets, including TRM cells.
Conclusions:
- The provided protocols ensure representative ex vivo analysis of immune cells.
- Optimized tissue processing is critical for accurate phenotyping of sensitive cell subsets.
- These methods support research into adaptive immunity and tissue-resident immune cells.
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