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Updated: Sep 5, 2025

In Vivo Functional Study of Disease-associated Rare Human Variants Using Drosophila
Published on: August 20, 2019
INDY-From Flies to Worms, Mice, Rats, Non-Human Primates, and Humans
Dushyant Mishra1, Kavitha Kannan1, Kali Meadows1
1Department of Genetics and Genome Sciences, School of Medicine, University of Connecticut Health Center, Farmington, CT, United States.
Abstract:
I'm Not Dead Yet (Indy) is a fly homologue of the mammalian SLC13A5 (mSLC13A5) plasma membrane citrate transporter, a key metabolic regulator and energy sensor involved in health, longevity, and disease. Reduction of Indy gene activity in flies, and its homologs in worms, modulates metabolism and extends longevity. The metabolic changes are similar to what is obtained with caloric restriction (dietary restriction). Similar effects on metabolism have been observed in mice and rats. As a citrate transporter, INDY regulates cytoplasmic citrate levels. Indy flies heterozygous for a P-element insertion have increased spontaneous physical activity, increased fecundity, reduced insulin signaling, increased mitochondrial biogenesis, preserved intestinal stem cell homeostasis, lower lipid levels, and increased stress resistance. Mammalian Indy knockout (mIndy-KO) mice have higher sensitivity to insulin signaling, lower blood pressure and heart rate, preserved memory and are protected from the negative effects of a high-fat diet and some of the negative effects of aging. Reducing mIndy expression in human hepatocarcinoma cells has recently been shown to inhibit cell proliferation. Reduced Indy expression in the fly intestine affects intestinal stem cell proliferation, and has recently been shown to also inhibit germ cell proliferation in males with delayed sperm maturation and decreased spermatocyte numbers. These results highlight a new connection between energy metabolism and cell proliferation. The overrall picture in a variety of species points to a conserved role of INDY for metabolism and health. This is illustrated by an association of high mIndy gene expression with non-alcoholic fatty liver disease in obese humans. mIndy (mSLC13A5) coding region mutations (e.g., loss-of-function) are also associated with adverse effects in humans, such as autosomal recessive early infantile epileptic encephalopathy and Kohlschütter-Tönz syndrome. The recent findings illustrate the importance of mIndy gene for human health and disease. Furthermore, recent work on small-molecule regulators of INDY highlights the promise of INDY-based treatments for ameliorating disease and promoting healthy aging.
Insights
The I'm Not Dead Yet (Indy) gene, a citrate transporter, regulates metabolism and extends lifespan across species. Lowering Indy activity improves healthspan and may offer therapeutic benefits for metabolic diseases and aging.
Area of Science:
- Biochemistry
- Genetics
- Metabolism
Background:
- The I'm Not Dead Yet (Indy) gene is a fly homolog of the mammalian SLC13A5 (mSLC13A5) citrate transporter.
- This transporter is crucial for regulating metabolism, energy sensing, and is implicated in health, longevity, and disease.
Purpose of the Study:
- To investigate the conserved role of the INDY gene in regulating metabolism and its impact on health and aging across different species.
- To explore the connection between energy metabolism and cell proliferation regulated by INDY.
Main Methods:
- Studied the effects of reducing Indy gene activity in flies (heterozygous P-element insertion) and its homologs in worms.
- Analyzed mammalian Indy knockout (mIndy-KO) mice for metabolic and physiological changes.
- Examined the impact of reduced mIndy expression in human hepatocarcinoma cells and fly intestinal stem cells.
Main Results:
- Reduced Indy activity in flies and worms modulated metabolism, extended longevity, and mimicked caloric restriction effects.
- Indy manipulation in flies led to increased physical activity, fecundity, stress resistance, and preserved stem cell homeostasis.
- mIndy-KO mice exhibited improved insulin sensitivity, lower blood pressure, preserved memory, and protection against high-fat diets and aging effects.
- Reduced mIndy expression inhibited cell proliferation in human cells and fly intestines, affecting stem and germ cells.
Conclusions:
- The INDY gene plays a conserved role in regulating metabolism and healthspan across diverse species.
- Altering INDY function impacts cellular processes like proliferation and offers potential therapeutic targets for metabolic diseases and aging.
- Mutations in the mammalian INDY gene (mSLC13A5) are linked to severe human conditions, underscoring its critical importance.
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