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Identification of Circular RNAs using RNA Sequencing
Published on: November 14, 2019
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Expression profile of circular RNAs in continuous light-induced ovarian dysfunction
Yuling Li1, Guicheng Xia1, Yong Tan1
1Nanjing University of Chinese Medicine, Nanjing 210029, China; Affiliated Hospital of Nanjing University of Chinese Medicine, Nanjing 210029, China.
Ecotoxicology and Environmental Safety
|July 14, 2022
Summary
Continuous light exposure disrupts ovarian function by altering circular RNA (circRNA) expression profiles. These findings offer new molecular targets for treating light-induced ovarian dysfunction.
Area of Science:
- Reproductive Biology
- Molecular Endocrinology
- Chronobiology
Background:
- Continuous light exposure is a known disruptor of reproductive function.
- Circular RNAs (circRNAs) are emerging as key regulators in various biological processes, including reproductive health.
- The specific role of circRNAs in light-induced ovarian dysfunction remains largely unexplored.
Purpose of the Study:
- To investigate the differential expression profiles of circRNAs in rat ovaries under continuous light exposure.
- To elucidate the potential molecular mechanisms by which circRNAs contribute to ovarian dysfunction induced by light.
- To identify novel circRNAs and pathways involved in the pathophysiology of ovarian dysfunction.
Main Methods:
- High-throughput sequencing to profile circRNA transcriptomes in rat ovaries under continuous light (L/L) versus control (L/D) conditions.
- Bioinformatic analyses including Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment.
- Construction of circRNA-microRNA-messenger RNA (mRNA) networks to predict functional interactions.
- Quantitative real-time reverse transcription polymerase chain reaction (qRT-PCR) for validation of circRNAs and circadian rhythm genes.
Main Results:
- 305 differentially expressed circRNAs (DEcircRNAs) were identified, with 211 upregulated and 94 downregulated.
- Bioinformatic analyses suggested that DEcircRNAs interact with microRNAs involved in key ovarian dysfunction pathways (e.g., androgen receptor signaling, GnRH signaling).
- Specific circRNAs (rno_circ:chr2:86868285-86964272 and rno_circ:chr1:62330221-62360073) were implicated in ovarian dysfunction pathophysiology.
- Continuous light reduced expression of circadian rhythm genes (CLOCK, BAML1, PER1, PER2) and altered apoptosis-related genes (Bax, Bcl-2, Caspase3).
Conclusions:
- Altered circRNA expression profiles in rat ovaries are associated with continuous light-induced ovarian dysfunction.
- These DEcircRNAs and their associated pathways represent potential molecular targets for understanding and treating ovarian dysfunction.
- The study provides novel insights into the molecular mechanisms underlying circadian rhythm disruption and its impact on ovarian health.
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