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Updated: Sep 4, 2025

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Mapping Alzheimer's Disease Variants to Their Target Genes Using Computational Analysis of Chromatin Configuration
Published on: January 9, 2020
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Genetic Mapping of APP and Amyloid-β Biology Modulation by Trisomy 21
Paige Mumford1, Justin Tosh2, Silvia Anderle1
1The UK Dementia Research Institute, University College London, London, WC1N 3BG, United Kingdom.
Summary
Individuals with Down syndrome (DS) develop early Alzheimer's disease (AD) due to extra chromosome 21 genes. This study shows other chromosome 21 genes, besides APP, can reduce amyloid-beta buildup, potentially delaying AD onset in DS.
Area of Science:
- Genetics
- Neuroscience
- Molecular Biology
Background:
- Down syndrome (DS) is linked to early-onset Alzheimer's disease (AD), with trisomy 21 increasing amyloid precursor protein (APP) gene copies.
- The exact genetic mechanisms driving AD pathogenesis in DS, beyond APP duplication, remain incompletely understood.
Purpose of the Study:
- To investigate how genes on chromosome 21, other than APP, influence amyloid-beta (Aβ) accumulation in the brain.
- To identify specific genetic regions and candidate genes on chromosome 21 that modulate AD-related pathology in DS mouse models.
Main Methods:
- Utilized next-generation mouse models of DS (Tc1, Dp3Tyb, Dp(10)2Yey, Dp(17)3Yey) and an Aβ accumulation knockin model (AppNL-F).
- Analyzed Aβ levels in male and female mice with trisomy for chromosome 21 genes.
- Employed a mapping approach to pinpoint a subregion of chromosome 21 responsible for modulating Aβ levels and investigated candidate genes DYRK1A and BACE2.
Main Results:
- Trisomy of chromosome 21 genes, independent of APP copy number, partially ameliorates Aβ accumulation in the brain.
- Identified a specific subregion on chromosome 21 containing gene(s) that decrease Aβ levels.
- DYRK1A and BACE2 were investigated as potential candidates influencing Aβ pathology.
Conclusions:
- Extra copies of chromosome 21 genes, beyond APP, can modulate APP/Aβ metabolism in the brain under physiological conditions.
- This finding provides mechanistic insight into AD development in DS and explains the typically later onset of dementia compared to familial AD caused by APP triplication.
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