Polypeptide induced perylene probe excimer formation and its application in the noncovalent ratiometric detection of

Xiaoyu Gou1, Muhammad Azhar Hayat Nawaz2,3,4, Chaoyi Liu2

  • 1School of Chemistry and Environmental Engineering, Changchun University of Science and Technology, Changchun 130022, China.

Insights

A new ratiometric fluorescence method accurately detects matrix metalloproteinase (MMP) activity using polypeptide substrates and a perylene diimide derivative. This approach offers a simple, sensitive, and broad-spectrum tool for disease biomarker detection and potential clinical applications.

Area of Science:

  • Biochemistry
  • Analytical Chemistry
  • Molecular Biology

Background:

  • Matrix metalloproteinases (MMPs) are crucial biomarkers implicated in various diseases.
  • Accurate determination of MMP activity is essential for disease diagnosis and monitoring.
  • Existing methods for MMP detection can be complex or lack sensitivity.

Purpose of the Study:

  • To develop a sensitive and selective ratiometric fluorescence method for detecting MMP activity.
  • To establish a simple, cost-effective, and broad-spectrum assay for MMPs.
  • To investigate the inhibitory effects of flavonoid herbal extracts on MMPs and their impact on tumor cell metastasis.

Main Methods:

  • Designed and synthesized positively charged polypeptide substrates for MMPs.
  • Utilized a negatively charged perylene diimide derivative (PC1) that aggregates in the presence of polypeptides, leading to excimer fluorescence.
  • Developed a ratiometric fluorescence assay based on the ratio of monomer (545 nm) to excimer (680 nm) emission changes upon MMP-induced substrate cleavage and PC1 disaggregation.

Main Results:

  • The ratiometric method achieved sensitive detection of various MMPs (MMP-1, 2, 3, 7, 9, 13) with low limits of detection (e.g., 1.7 ng mL⁻¹ for MMP-9).
  • Flavonoid herbal extracts (mangiferin, apigenin, quercetin, isoliquiritigenin) demonstrated significant inhibition of MMP-2 and MMP-9 activity and suppressed tumor cell metastasis.
  • The method was successfully applied to quantify MMP-9 in human saliva samples, demonstrating its clinical relevance.

Conclusions:

  • The developed ratiometric fluorescence assay provides a simple, sensitive, selective, and cost-effective platform for MMP activity detection.
  • The assay does not require covalent labeling, relying on noncovalent interactions, making it broadly applicable.
  • This method holds significant potential for development into a clinical diagnostic tool for MMP-related diseases and for evaluating natural product inhibitors.