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Updated: Sep 4, 2025

Growing a Cystic Fibrosis-Relevant Polymicrobial Biofilm to Probe Community Phenotypes
Published on: April 19, 2024
Staphylococcus aureus and Pseudomonas aeruginosa Isolates from the Same Cystic Fibrosis Respiratory Sample Coexist in
Eryn E Bernardy1,2, Vishnu Raghuram2,3, Joanna B Goldberg2
1Department of Biology, Elon Universitygrid.255496.9, Elon, North Carolina, USA.
Abstract:
Respiratory infections with bacterial pathogens remain the major cause of morbidity in individuals with the genetic disease cystic fibrosis (CF). Some studies have shown that CF patients that harbor both Staphylococcus aureus and Pseudomonas aeruginosa in their lungs are at even greater risk for more severe and complicated respiratory infections and earlier death. However, the drivers for this worse clinical condition are not well understood. To investigate the interactions between these two microbes that might be responsible for their increased pathogenic potential, we obtained 28 pairs of S. aureus and P. aeruginosa from the same respiratory samples from 18 individuals with CF. We compared the survival of each S. aureus CF isolate cocultured with its corresponding coinfecting CF P. aeruginosa to when it was cocultured with non-CF laboratory strains of P. aeruginosa. We found that the S. aureus survival was significantly higher in the presence of the coinfecting P. aeruginosa compared to laboratory P. aeruginosa strains, regardless of whether the coinfecting isolate was mucoid or nonmucoid. We also tested how a non-CF S. aureus strain, JE2, behaved with each P. aeruginosa CF isolate and found that its interaction was similar to how the CF S. aureus isolate interacted with its coinfecting P. aeruginosa. Altogether, our work suggests that interactions between S. aureus and P. aeruginosa that promote coexistence in the CF lung are isolate-dependent and that this interaction appears to be driven mainly by P. aeruginosa. IMPORTANCE Previous studies have shown that in laboratory settings, Pseudomonas aeruginosa generally kills Staphylococcus aureus. However, these bacteria are often found coinfecting the lungs of cystic fibrosis (CF) patients, which has been associated with worse patient outcomes. To investigate the interactions between these two bacteria, we competed 28 coinfection pairs obtained from the same lung samples of 18 different CF patients. We compared these results to those we previously reported of each CF S. aureus isolate against a non-CF laboratory strain of P. aeruginosa. We found that S. aureus survival against its corresponding coinfection P. aeruginosa was higher than its survival against the laboratory strain of P. aeruginosa. These results suggest that there may be selection for coexistence of these microbes in the CF lung environment. Further understanding of the interactions between P. aeruginosa and S. aureus will provide insights into the drivers of coexistence and their impact on the host.
Insights
Staphylococcus aureus survives better with cystic fibrosis (CF) Pseudomonas aeruginosa than with lab strains, suggesting CF lung environments select for coexistence. This interaction, driven by P. aeruginosa, impacts CF patient outcomes.
Area of Science:
- Microbiology
- Pulmonary Medicine
- Genetics
Background:
- Respiratory infections are a major cause of morbidity in cystic fibrosis (CF) patients.
- Coinfection with Staphylococcus aureus and Pseudomonas aeruginosa in CF lungs is linked to worse outcomes.
- The mechanisms driving this increased pathogenicity are not well understood.
Purpose of the Study:
- To investigate the interactions between CF-derived S. aureus and P. aeruginosa isolates.
- To determine if these interactions promote bacterial survival and coexistence in the CF lung.
Main Methods:
- Coculturing of 28 S. aureus and P. aeruginosa pairs from CF patient samples.
- Comparison of S. aureus survival against coinfecting CF P. aeruginosa versus non-CF laboratory P. aeruginosa strains.
- Testing the interaction of a non-CF S. aureus strain with CF P. aeruginosa isolates.
Main Results:
- S. aureus survival was significantly higher when cocultured with its corresponding CF P. aeruginosa compared to laboratory strains.
- This enhanced survival was observed regardless of whether the CF P. aeruginosa was mucoid or nonmucoid.
- The interaction pattern was consistent even when using a non-CF S. aureus strain, suggesting P. aeruginosa drives the interaction.
Conclusions:
- Interactions between S. aureus and P. aeruginosa in the CF lung are isolate-dependent and promote coexistence.
- The P. aeruginosa isolate appears to be the primary driver of these pro-survival interactions.
- Understanding these microbial dynamics is crucial for insights into CF pathogenesis and host impact.

