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Multiplexed Immunofluorescence Analysis and Quantification of Intratumoral PD-1+ Tim-3+ CD8+ T Cells
Published on: February 8, 2018
Identifying an Immune-Related Gene ST8SIA1 as a Novel Target in Patients With Clear-Cell Renal Cell Carcinoma
Xu Hu1, Yanfei Yang2, Yaohui Wang1
1Institute of Urology, Department of Urology, West China Hospital, West China Medical School, Sichuan University, Chengdu, China.
Abstract:
Clear-cell renal cell carcinoma (ccRCC) is one of the most common urological cancers. The tumor microenvironment plays an important role in tumor development. The present study was conducted to identify novel immune-related biomarkers. The differentially expressed genes were identified using the ESTIMATE algorithm base on GEO and TCGA databases. The Kaplan-Meier survival curve and univariate and multivariate analyses were performed. The association between ST8SIA1 and the immune system was explored. The gene set enrichment analysis (GSEA) and online databases were used for functional annotation. ST8SIA1 was identified as a potential prognostic gene. Elevated ST8SIA1 was observed in the tumor tissues compared with adjacent normal tissues and associated with higher T stage and advanced TNM stage (all p < 0.05). The mRNA and protein levels of ST8SIA1 in cancer tissues and cells are also upregulated. The Kaplan-Meier survival curve and univariate and multivariate analyses showed that higher expression of ST8SIA1 was associated with worse OS (all p < 0.05). ST8SIA1 expression levels were negatively correlated with tumor purity and positively associated with infiltrated immune cells and expression of immune checkpoint genes. Function analysis also revealed that ST8SIA1 was significantly associated with immune-related pathways. In conclusion, ST8SIA1 was identified as an immune-related gene and a potential target in ccRCC patients. Further relevant studies are required to validate our findings.
Insights
This study identifies ST8SIA1 as a novel immune-related biomarker for clear-cell renal cell carcinoma (ccRCC). Elevated ST8SIA1 expression correlates with advanced stages and poorer outcomes in ccRCC patients.
Area of Science:
- Oncology
- Immunology
- Genetics
Background:
- Clear-cell renal cell carcinoma (ccRCC) is a prevalent urological cancer.
- The tumor microenvironment significantly influences ccRCC progression.
- Identifying novel immune-related biomarkers is crucial for ccRCC management.
Purpose of the Study:
- To identify novel immune-related biomarkers in ccRCC.
- To investigate the prognostic value of ST8SIA1 in ccRCC.
- To explore the association between ST8SIA1 and the tumor immune microenvironment.
Main Methods:
- Utilized ESTIMATE algorithm on GEO and TCGA databases to identify differentially expressed genes.
- Performed Kaplan-Meier survival analysis, univariate and multivariate analyses.
- Explored ST8SIA1's association with immune cells, immune checkpoints, and functional pathways via GSEA and online databases.
Main Results:
- ST8SIA1 was identified as a potential prognostic gene in ccRCC.
- Elevated ST8SIA1 mRNA and protein levels were observed in ccRCC tissues, correlating with higher T and TNM stages.
- Higher ST8SIA1 expression was linked to worse overall survival (OS) and negatively correlated with tumor purity but positively with immune cell infiltration and immune checkpoint genes.
Conclusions:
- ST8SIA1 is an immune-related gene and a potential prognostic biomarker in ccRCC.
- ST8SIA1 may serve as a therapeutic target for ccRCC patients.
- Further research is warranted to validate these findings and explore therapeutic strategies targeting ST8SIA1.
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