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Updated: Sep 3, 2025

Evidence-based Knowledge Synthesis and Hypothesis Validation: Navigating Biomedical Knowledge Bases via Explainable AI and Agentic Systems
Published on: June 13, 2025
ScienceQA: a novel resource for question answering on scholarly articles
Tanik Saikh1, Tirthankar Ghosal2, Amish Mittal1
1Department of Computer Science and Engineering, Indian Institute of Technology Patna, Bihta, Patna, India.
Abstract:
Machine Reading Comprehension (MRC) of a document is a challenging problem that requires discourse-level understanding. Information extraction from scholarly articles nowadays is a critical use case for researchers to understand the underlying research quickly and move forward, especially in this age of infodemic. MRC on research articles can also provide helpful information to the reviewers and editors. However, the main bottleneck in building such models is the availability of human-annotated data. In this paper, firstly, we introduce a dataset to facilitate question answering (QA) on scientific articles. We prepare the dataset in a semi-automated fashion having more than 100k human-annotated context-question-answer triples. Secondly, we implement one baseline QA model based on Bidirectional Encoder Representations from Transformers (BERT). Additionally, we implement two models: the first one is based on Science BERT (SciBERT), and the second is the combination of SciBERT and Bi-Directional Attention Flow (Bi-DAF). The best model (i.e., SciBERT) obtains an F1 score of 75.46%. Our dataset is novel, and our work opens up a new avenue for scholarly document processing research by providing a benchmark QA dataset and standard baseline. We make our dataset and codes available here at https://github.com/TanikSaikh/Scientific-Question-Answering.
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