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Single Nucleotide Polymorphisms-SNPs01:05

Single Nucleotide Polymorphisms-SNPs

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A single nucleotide polymorphism or SNP is a single nucleotide variation at a specific genomic position in a large population. It is the most prevalent type of sequence variation found in the human genome. Point mutations that occur in more than 1% of the population qualify as SNPs. These are present once every 1000 nucleotides on an average in the human genome. Replacement of a purine with another purine (A/G) or a pyrimidine with another pyrimidine (C/T) is known as a transition. In contrast,...
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A mutation is a change in the sequence of bases of DNA or RNA in a genome. Some mutations occur during replication of the genome due to errors made by the polymerase enzymes that replicate DNA or RNA. Unlike DNA polymerase, RNA polymerase is prone to errors because it is not capable of “proofreading” its work. Viruses with RNA-based genomes, like HIV, therefore accrue mutations faster than viruses with DNA-based genomes. Because mutation and recombination provide the raw material...
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Leaky Scanning

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During most eukaryotic translation processes, the small 40S ribosome subunit scans an mRNA from its 5' end until it encounters the first start AUG codon. The large 60S ribosomal subunit then joins the smaller one to initiate protein synthesis. The location of the translation initiation is largely determined by the nucleotides near the start codon as there may be multiple translation initiation sites present on the mRNA.  Marilyn Kozak discovered that the sequence RCCAUGG (where R...
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Cells are sometimes infected by more than one virus at once. When two viruses disassemble to expose their genomes for replication in the same cell, similar regions of their genomes can pair together and exchange sequences in a process called recombination. Alternatively, viruses with segmented genomes can swap segments in a process called reassortment.
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Conjugated Proteins

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Simple proteins and protein complexes contain only amino acids. In contrast, many other proteins, called conjugated proteins, covalently bond with non-protein moieties.
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Human ACE2 Polymorphisms from Different Human Populations Modulate SARS-CoV-2 Infection.

Pan Hu1, Vanessa L Bauer2, Sara L Sawyer2

  • 1Department of Microbiology and Immunology, Albert Einstein College of Medicine, Bronx, NY 10461, USA.

Viruses
|July 27, 2022
PubMed
Summary

Genetic variations in the human ACE2 gene influence SARS-CoV-2 infection and COVID-19 severity. Specific ACE2 polymorphisms may increase or decrease infection risk, potentially explaining ethnic differences in disease outcomes.

Keywords:
COVID-19SARS-CoV-2human ACE2infectionpolymorphisms

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Area of Science:

  • Genetics
  • Virology
  • Epidemiology

Background:

  • The COVID-19 pandemic, caused by SARS-CoV-2, has led to significant global mortality.
  • Variability in COVID-19 symptoms suggests a role for genetic and environmental factors.
  • The ACE2 gene encodes the primary receptor for SARS-CoV-2 entry into human cells.

Purpose of the Study:

  • To investigate the impact of human ACE2 (hACE2) gene polymorphisms on SARS-CoV-2 infection susceptibility and COVID-19 symptom severity.
  • To determine if naturally occurring hACE2 variants affect viral entry and disease progression.

Main Methods:

  • Analysis of naturally occurring hACE2 polymorphisms in the human population.
  • Comparison of SARS-CoV-2 infection rates and severity associated with different hACE2 variants versus wild-type.
  • Assessment of hACE2 variant effects on viral entry without altering cell surface expression levels.

Main Results:

  • Several hACE2 variants (S19P, I21V, E23K, K26R, K31R, N33I, H34R, E35K, T92I) demonstrated increased SARS-CoV-2 infection.
  • Specific variants (K26R, T92I) showed a three-fold increase in infection without affecting ACE2 surface levels.
  • Other variants (D38V, Y83H, I468V, N638S) exhibited reduced infection, suggesting a protective effect.
  • D38V and Y83H variants decreased SARS-CoV-2 infection by four- and ten-fold, respectively, without altering surface expression.
  • Protective hACE2 polymorphisms were predominantly found in Asian populations.

Conclusions:

  • hACE2 gene polymorphisms significantly modulate host susceptibility to SARS-CoV-2 infection.
  • Certain hACE2 variants may increase the risk of severe COVID-19, while others offer protection.
  • The prevalence of protective hACE2 variants in specific ethnic groups may partially explain observed differences in COVID-19 mortality rates worldwide.