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Updated: Sep 3, 2025

Investigating Bacterial-Fungal Interactions using Fungal Highway Columns in Diverse Environments and Substrates
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Investigating Bacterial-Fungal Interactions using Fungal Highway Columns in Diverse Environments and Substrates

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FunOMIC: Pipeline with built-in fungal taxonomic and functional databases for human mycobiome profiling

Zixuan Xie1,2, Chaysavanh Manichanh1,2

  • 1Microbiome Lab, Vall d'Hebron Institut de Recerca (VHIR), Vall d'Hebron Barcelona Hospital Campus, Passeig Vall d'Hebron 119-129, 08035 Barcelona, Spain.

Computational and Structural Biotechnology Journal
|July 27, 2022
PubMed

Keywords:
CD, Crohn’s diseaseESRD, End-stage renal diseaseFDR, False discovery rateFungal databasesGS, GallstonesHC, Healthy controlHTS, High throughput sequencingITS, internal transcribed spacerInter-kingdom interactionsMycobiomeNA, Not applicablePLWH, People live with HIVPSO, PsoriasisSCFA, Short chain fatty acidSCZ, SchizophreniaShotgun metagenomicsT1D, Type 1 diabetesT2D, Type 2 diabetesTB, TuberculosisTaxonomy and functionsUC, Ulcerative colitis

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