Related Experiment Video
Updated: Sep 3, 2025

Synthesis of Wavelength-shifting DNA Hybridization Probes by Using Photostable Cyanine Dyes
Published on: July 6, 2016
Synthesis and study on aggregation behaviours in liquid phase of three prepared cyanine dyes
Mengcui Xu1,2, Xipeng Li1,2, Qin Zeng1,2
1MOE Key Laboratory of Laser Life Science & Institute of Laser Life Science, Guangdong Provincial Key Laboratory of Laser Life Science, College of Biophotonics, South China Normal University, Guangzhou, China.
Abstract:
Here we investigate the aggregation behaviours of three prepared dyes in the liquid phase to pick out one possessing J-aggregation characteristic that is of significant interest for organic materials used in multiple bio-applications. The self-assembly of dyes usually leads to various forms of aggregates, for example, H-aggregates or J-aggregates and it is easy to distinguish bathochromic J-aggregation from hypsochromic H-aggregation using UV/vis light spectroscopy. Enlightened by the cyanine dyes that have shown a great tendency to self-associate, we designed and synthesized three cyanine dyes: Cy7-Ph, DCy7-Ph, and SN-Cy7-Ph, followed by the study of the influence of multiple factors on their aggregation behaviours, including solvent polarity, ionic strength, and temperature. Finally, we found that of the three molecules only SN-Cy7-Ph could self-assemble into J-aggregates conveniently and stably in the aqueous phase under normal conditions.
Related Concept Videos
Aldehydes and Ketones with HCN: Cyanohydrin Formation Overview
Aryldiazonium Salts to Azo Dyes: Diazo Coupling

