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Updated: Sep 3, 2025

A Rapid In Vivo Bioassay for Developmentally Active Enhancers
Chimeric RNA TNNI2-ACTA1-V1 Regulates Cell Proliferation by Regulating the Expression of NCOA3
Dongyu Liu1, Jiaxin Li1, Wanjun Hao1
1College of Animal Sciences and Technology, Northeast Agricultural University, Harbin, China.
Abstract:
Chimeric RNA is a crucial target for tumor diagnosis and drug therapy, also having its unique biological role in normal tissues. TNNI2-ACTA1-V1 (TA-V1), a chimeric RNA discovered by our laboratory in porcine muscle tissue, can inhibit the proliferation of Porcine Skeletal Muscle Satellite Cells (PSCs). The regulatory mechanism of TA-V1 in PSCs remains unclear, but we speculate that NCOA3, DDR2 and RDX may be the target genes of TA-V1. In this study, we explored the effects of NCOA3, DDR2 and RDX on cell viability and cell proliferation by CCK-8 assay, EdU staining and flow cytometry. Furthermore, the regulatory pathway of proliferation in PSCs mediated by TA-V1 through NCOA3 or CyclinD1 was elucidated by co-transfection and co-immunoprecipitation (Co-IP). The results revealed that overexpression of NCOA3 significantly increased cell viability and the expression level of CyclinD1, and also promotes cell proliferation by changing cells from the G1 phase to the S phase. In addition, inhibiting the expression of NCOA3 substantially reduced cell viability and inhibited cell proliferation. Overexpression of DDR2 and RDX had no significant effect on cell viability and proliferation. Co-transfection experiments showed that NCOA3 could rescue the proliferation inhibition of PSCs caused by TA-V1. Co-IP assay indicated that TA-V1 directly interacts with NCOA3. Our study explores the hypothesis that TA-V1 directly regulates NCOA3, indirectly regulating CyclinD1, thereby regulating PSCs proliferation. We provide new putative mechanisms of porcine skeletal muscle growth and lay the foundation for the study of chimeric RNA in normal tissues.
Insights
Chimeric RNA TNNI2-ACTA1-V1 (TA-V1) inhibits porcine skeletal muscle cell proliferation by directly regulating NCOA3. This finding reveals new mechanisms for skeletal muscle growth and chimeric RNA function in normal tissues.
Area of Science:
- Molecular Biology
- Cell Biology
- Genetics
Background:
- Chimeric RNAs are vital in tumor diagnosis and therapy, with roles in normal tissues.
- The chimeric RNA TNNI2-ACTA1-V1 (TA-V1), discovered in porcine muscle, inhibits Porcine Skeletal Muscle Satellite Cells (PSCs) proliferation.
- The precise regulatory mechanism of TA-V1 in PSCs is not fully understood.
Purpose of the Study:
- To investigate the effects of potential TA-V1 target genes (NCOA3, DDR2, RDX) on PSC viability and proliferation.
- To elucidate the regulatory pathway of PSC proliferation mediated by TA-V1 via NCOA3 or CyclinD1.
- To explore the direct interaction between TA-V1 and its target genes.
Main Methods:
- Cell Counting Kit-8 (CCK-8) assay for cell viability.
- EdU staining and flow cytometry for cell proliferation analysis.
- Co-transfection and co-immunoprecipitation (Co-IP) assays to determine regulatory pathways and interactions.
Main Results:
- NCOA3 overexpression increased cell viability, CyclinD1 expression, and promoted G1 to S phase transition, enhancing proliferation.
- NCOA3 inhibition reduced cell viability and proliferation.
- DDR2 and RDX overexpression showed no significant effects on cell viability or proliferation.
- TA-V1's proliferation inhibition was rescued by NCOA3 co-transfection.
- TA-V1 was found to directly interact with NCOA3.
Conclusions:
- TA-V1 directly regulates NCOA3, which in turn indirectly regulates CyclinD1, ultimately controlling PSC proliferation.
- This study provides novel insights into the mechanisms of porcine skeletal muscle growth.
- The findings lay the groundwork for studying chimeric RNA functions in normal tissues.
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