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Related Concept Videos

Phase Transitions02:31

Phase Transitions

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Whether solid, liquid, or gas, a substance's state depends on the order and arrangement of its particles (atoms, molecules, or ions). Particles in the solid pack closely together, generally in a pattern. The particles vibrate about their fixed positions but do not move or squeeze past their neighbors. In liquids, although the particles are closely spaced, they are randomly arranged. The position of the particles are not fixed—that is, they are free to move past their neighbors to...
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Phase Changes01:19

Phase Changes

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Phase transitions play an important theoretical and practical role in the study of heat flow. In melting or fusion, a solid turns into a liquid; the opposite process is freezing. In evaporation, a liquid turns into a gas; the opposite process is condensation.
A substance melts or freezes at a temperature called its melting point and boils or condenses at its boiling point. These temperatures depend on pressure. High pressure favors the denser form of the substance, so typically, high pressure...
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Phase Diagram01:19

Phase Diagram

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The phase of a given substance depends on the pressure and temperature. Thus, plots of pressure versus temperature showing the phase in each region provide considerable insights into the thermal properties of substances. Such plots are known as phase diagrams. For instance, in the phase diagram for water (Figure 1), the solid curve boundaries between the phases indicate phase transitions (i.e., temperatures and pressures at which the phases coexist).
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Phase Transitions: Melting and Freezing02:39

Phase Transitions: Melting and Freezing

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Heating a crystalline solid increases the average energy of its atoms, molecules, or ions, and the solid gets hotter. At some point, the added energy becomes large enough to partially overcome the forces holding the molecules or ions of the solid in their fixed positions, and the solid begins the process of transitioning to the liquid state or melting. At this point, the temperature of the solid stops rising, despite the continual input of heat, and it remains constant until all of the solid is...
12.7K
States of Matter and Phase Changes00:59

States of Matter and Phase Changes

1.2K
The internal energy of a substance—the total kinetic energy of all its molecules and the potential energy of their associated forces—depends on the strength of the intermolecular forces in the condensed phases and the pressure exerted on the substance. The internal energy of a substance is the highest in the gaseous state, the lowest in the solid state, and intermediate in the liquid state. Phase transitions are caused by changes in physical conditions, such as temperature and...
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Phase Transitions: Vaporization and Condensation02:39

Phase Transitions: Vaporization and Condensation

18.0K
The physical form of a substance changes on changing its temperature. For example, raising the temperature of a liquid causes the liquid to vaporize (convert into vapor). The process is called vaporization—a surface phenomenon. Vaporization occurs when the thermal motion of the molecules overcome the intermolecular forces, and the molecules (at the surface) escape into the gaseous state. When a liquid vaporizes in a closed container, gas molecules cannot escape. As these gas phase...
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High-Contrast and Fast Photorheological Switching of a Twist-Bend Nematic Liquid Crystal
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Native SAD phasing at room temperature.

Jack B Greisman1, Kevin M Dalton1, Candice J Sheehan1

  • 1Department of Molecular and Cellular Biology, Harvard University, 52 Oxford Street, Cambridge, Massachusetts, USA.

Acta Crystallographica. Section D, Structural Biology
|August 2, 2022
PubMed
Summary
This summary is machine-generated.

This study presents a new method for single-wavelength anomalous diffraction (SAD) experiments at room temperature, enabling accurate macromolecular structure determination without cryogenic freezing. This approach captures native protein conformations and improves data quality for phasing and model building.

Keywords:
X-ray crystallographymodel buildingnative SADphasingroom temperature

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Area of Science:

  • Structural biology
  • Crystallography
  • Biophysics

Background:

  • Single-wavelength anomalous diffraction (SAD) is crucial for solving the phase problem in macromolecular crystallography.
  • Cryogenic temperatures, typically used for SAD, can distort protein structures and hinder data merging.
  • Radiation damage is a concern in X-ray crystallography, often necessitating low-temperature experiments.

Purpose of the Study:

  • To develop and validate a strategy for high-quality SAD data collection at room temperature (295 K).
  • To overcome limitations associated with cryogenic SAD experiments, such as altered protein conformations and non-uniform freezing.
  • To demonstrate the feasibility of native SAD phasing at room temperature for structure determination.

Main Methods:

  • Native SAD phasing was performed at 6.55 keV.
  • Data were collected from single crystals at room temperature (295 K).
  • Four structures from three model systems were solved using this room-temperature SAD approach.

Main Results:

  • High-quality diffraction data were obtained at room temperature.
  • Successful native SAD phasing enabled structure determination without cryoprotection.
  • The method allowed for the observation of alternate protein conformations present at physiological temperatures.
  • Automatic phasing and model building were facilitated by the collected data.

Conclusions:

  • Room-temperature SAD is a viable strategy for accurate macromolecular structure determination.
  • This method preserves native protein conformations, providing more biologically relevant structural information.
  • The technique simplifies experimental procedures by eliminating the need for cryogenic conditions.