Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Concept Videos

Orthogonal Trajectories01:26

Orthogonal Trajectories

Orthogonal trajectories describe the geometric relationship between two families of curves that intersect each other at right angles. One illustrative case involves a family of parabolas that open sideways along the x-axis. These curves share a common shape but differ by a scaling parameter, resulting in a set of curves that all pass through the origin and widen at different rates.Determining Orthogonal TrajectoriesTo identify the orthogonal trajectories for these parabolas, the first step...

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

Effects of rim fluctuations in classical nucleation theory of virus capsids.

The Journal of chemical physics·2026
Same author

Realistic transition paths for large biomolecular systems: A Langevin bridge approach.

The Journal of chemical physics·2026
Same author

Frequency-dependent conductivity of concentrated electrolytes: A stochastic density functional theory.

The Journal of chemical physics·2024
Same author

Analyzing the Geometry and Dynamics of Viral Structures: A Review of Computational Approaches Based on Alpha Shape Theory, Normal Mode Analysis, and Poisson-Boltzmann Theories.

Viruses·2023
Same author

Erratum: "Conductance of concentrated electrolytes: Multivalency and the Wien effect" [J. Chem. Phys. 157, 154502 (2022)].

The Journal of chemical physics·2023
Same author

Computing the Volume, Surface Area, Mean, and Gaussian Curvatures of Molecules and Their Derivatives.

Journal of chemical information and modeling·2023
Same journal

Revisiting crossed-correlated baths in open quantum systems simulated by HEOM or T-TEDOPA.

The Journal of chemical physics·2026
Same journal

Vesicle size and membrane composition control monomer transfer pathways in multicomponent lipid vesicles.

The Journal of chemical physics·2026
Same journal

Polaron-mediated exciton dynamics of P(NDI2OD-T2) unveiled by transient absorption spectroscopy under electrochemical conditions.

The Journal of chemical physics·2026
Same journal

Green-Kubo relation in a mesoscale odd fluid model.

The Journal of chemical physics·2026
Same journal

Nitrogenation of microscopic MoS2 surfaces by oxidation scanning probe lithography.

The Journal of chemical physics·2026
Same journal

Molecular structure, binding, and disorder in TDBC-Ag plexcitonic assemblies.

The Journal of chemical physics·2026
See all related articles

Related Experiment Video

Updated: Jun 16, 2026

A Simple, Robust, and High Throughput Single Molecule Flow Stretching Assay Implementation for Studying Transport of Molecules Along DNA
12:05

A Simple, Robust, and High Throughput Single Molecule Flow Stretching Assay Implementation for Studying Transport of Molecules Along DNA

Published on: October 1, 2017

8.3K

Sampling constrained stochastic trajectories using Brownian bridges.

Patrice Koehl1, Henri Orland2

  • 1Department of Computer Sciences, University of California, Davis, California 95616, USA.

The Journal of Chemical Physics
|August 6, 2022
PubMed
Summary
This summary is machine-generated.

We developed a novel method using Brownian bridges to accurately sample conditioned trajectories for systems under Langevin dynamics. This approach enhances the simulation of systems transitioning between states, particularly at low temperatures.

More Related Videos

Single-Molecule Tracking Microscopy - A Tool for Determining the Diffusive States of Cytosolic Molecules
10:20

Single-Molecule Tracking Microscopy - A Tool for Determining the Diffusive States of Cytosolic Molecules

Published on: September 5, 2019

8.3K
Author Spotlight: Evaluation of Protein-Condensate Dynamics in Live Human Cells
06:48

Author Spotlight: Evaluation of Protein-Condensate Dynamics in Live Human Cells

Published on: January 5, 2024

4.0K

Related Experiment Videos

Last Updated: Jun 16, 2026

A Simple, Robust, and High Throughput Single Molecule Flow Stretching Assay Implementation for Studying Transport of Molecules Along DNA
12:05

A Simple, Robust, and High Throughput Single Molecule Flow Stretching Assay Implementation for Studying Transport of Molecules Along DNA

Published on: October 1, 2017

8.3K
Single-Molecule Tracking Microscopy - A Tool for Determining the Diffusive States of Cytosolic Molecules
10:20

Single-Molecule Tracking Microscopy - A Tool for Determining the Diffusive States of Cytosolic Molecules

Published on: September 5, 2019

8.3K
Author Spotlight: Evaluation of Protein-Condensate Dynamics in Live Human Cells
06:48

Author Spotlight: Evaluation of Protein-Condensate Dynamics in Live Human Cells

Published on: January 5, 2024

4.0K

Area of Science:

  • Computational Physics
  • Statistical Mechanics
  • Stochastic Processes

Background:

  • Simulating systems under Langevin dynamics is crucial for understanding molecular processes.
  • Sampling trajectories conditioned on specific endpoints is computationally challenging.
  • Existing methods may lack accuracy or efficiency for certain systems.

Purpose of the Study:

  • To introduce a new, accurate method for sampling conditioned trajectories under Langevin dynamics.
  • To leverage Brownian bridges for improved trajectory simulation.
  • To provide a computationally efficient approach for exploring system pathways.

Main Methods:

  • Utilizing Brownian bridges to define conditioned trajectories.
  • Reformulating bridge equations into a non-linear stochastic integro-differential equation.
  • Approximating the equation for bundled trajectories (low temperature/transition paths).
  • Solving the approximate equation iteratively via a fixed-point method.

Main Results:

  • The proposed method accurately samples conditioned trajectories.
  • The iterative fixed-point method provides an efficient solution for the approximate equation.
  • Demonstrated performance on simple systems, validating the approach.
  • The method is particularly effective for low-temperature or transition path sampling.

Conclusions:

  • The Brownian bridge-based method offers a highly accurate way to generate conditioned trajectories.
  • This technique enhances the study of systems evolving under Langevin dynamics.
  • The method shows promise for applications in statistical mechanics and computational simulations.