Related Experiment Video
Updated: Sep 2, 2025

Using Next Generation Sequencing to Identify Mutations Associated with Repair of a CAS9-induced Double Strand Break Near the CD4 Promoter
Published on: March 31, 2022
Ionizing radiation damage and repair from 3D-genomic perspective
Yang Zheng1, Hao Li2, Xiaochen Bo2
1Institute of Health Service and Transfusion Medicine, Beijing 100850, China; State Key Laboratory of NBC Protection for Civilian, Beijing 102205, China.
Ionizing radiation (IR) causes DNA damage and repair within complex 3D genome structures. Studying radiobiology from this 3D genomic perspective may explain varying radiosensitivity levels.
Area of Science:
- Genomics
- Radiobiology
- Molecular Biology
Background:
- Ionizing radiation (IR) induces DNA damage.
- DNA damage response and repair are critical cellular processes.
- Chromatin structure influences DNA accessibility and repair dynamics.
Purpose of the Study:
- To investigate DNA damage and repair from a 3D genomic perspective.
- To explore how chromatin architecture impacts IR-induced DNA damage and repair.
- To correlate 3D genomic features with radiosensitivity.
Main Methods:
- 3D genome organization analysis.
- DNA damage assessment techniques.
- Radiosensitivity assays.
Main Results:
- IR-induced DNA damage and repair exhibit variations across the 3D genome.
- Specific 3D genomic regions show differential susceptibility to IR.
- These variations in damage and repair correlate with observed radiosensitivity.
Conclusions:
- A 3D genomic approach is essential for understanding radiobiology.
- Chromatin structure plays a significant role in IR response.
- Understanding 3D genome organization can elucidate radiosensitivity differences.
Related Concept Videos
Mutations
Chromosomal Alterations Are Large-Scale Mutations
While point mutations are changes in a single nucleotide in...
Overview of DNA Repair
Chemically...
Nucleotide Excision Repair
Cells are regularly exposed to mutagens—factors in the environment that can damage DNA and generate mutations. UV radiation is one of the most common mutagens and is estimated to introduce a significant number of changes in DNA. These include bends or kinks in the structure, which can block DNA replication or transcription. If these errors are not fixed, the damage can cause mutations, which in turn can result in cancer or disease depending on which sequences are...
Other Unique Bacteria
Fixing Double-strand Breaks
Homologous Recombination

