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Updated: Sep 2, 2025

T and B Cell Receptor Immune Repertoire Analysis using Next-generation Sequencing
Published on: January 12, 2021
T-cell receptor diversity in minimal change disease in the NEPTUNE study
Shiying Liu1,2, William S Bush1,2,3, Kristy Miskimen1,2,3
1Department of Population and Quantitative Health Sciences, Case Western Reserve University, Cleveland, OH, USA.
Background:
Minimal change disease (MCD) is the major cause of childhood idiopathic nephrotic syndrome, which is characterized by massive proteinuria and debilitating edema. Proteinuria in MCD is typically rapidly reversible with corticosteroid therapy, but relapses are common, and children often have many adverse events from the repeated courses of immunosuppressive therapy. The pathobiology of MCD remains poorly understood. Prior clinical observations suggest that abnormal T-cell function may play a central role in MCD pathogenesis. Based on these observations, we hypothesized that T-cell responses to specific exposures or antigens lead to a clonal expansion of T-cell subsets, a restriction in the T-cell repertoire, and an elaboration of specific circulating factors that trigger disease onset and relapses.
Methods:
To test these hypotheses, we sequenced T-cell receptors in fourteen MCD, four focal segmental glomerulosclerosis (FSGS), and four membranous nephropathy (MN) patients with clinical data and blood samples drawn during active disease and during remission collected by the Nephrotic Syndrome Study Network (NEPTUNE). We calculated several T-cell receptor diversity metrics to assess possible differences between active disease and remission states in paired samples.
Results:
Median productive clonality did not differ between MCD active disease (0.0083; range: 0.0042, 0.0397) and remission (0.0088; range: 0.0038, 0.0369). We did not identify dominant clonotypes in MCD active disease, and few clonotypes were shared with FSGS and MN patients.
Conclusions:
While these data do not support an obvious role of the adaptive immune system T-cells in MCD pathogenesis, further study is warranted given the limited sample size. A higher resolution version of the Graphical abstract is available as Supplementary information.
Insights
This study investigated T-cell receptor diversity in minimal change disease (MCD) and found no significant differences between active disease and remission. These findings suggest T-cells may not play a direct role in MCD pathogenesis.
Area of Science:
- Immunology
- Nephrology
- Molecular Biology
Background:
- Minimal change disease (MCD) is a primary cause of childhood nephrotic syndrome, characterized by proteinuria and edema.
- While corticosteroids treat MCD, frequent relapses and adverse effects from immunosuppression are common.
- The underlying pathobiology of MCD is not well understood, with prior theories suggesting abnormal T-cell function.
Purpose of the Study:
- To investigate the role of T-cell receptor diversity in minimal change disease (MCD) pathogenesis.
- To test the hypothesis that T-cell responses contribute to MCD onset and relapses.
- To compare T-cell receptor clonality and repertoire diversity in MCD patients during active disease and remission.
Main Methods:
- T-cell receptor sequencing was performed on blood samples from 14 MCD patients, alongside 4 focal segmental glomerulosclerosis (FSGS) and 4 membranous nephropathy (MN) patients.
- Samples were collected during both active disease and remission phases.
- T-cell receptor diversity metrics were calculated to identify potential differences between disease states.
Main Results:
- No significant difference in median productive clonality was observed between active MCD (0.0083) and remission (0.0088).
- Dominant T-cell clonotypes were not identified during active MCD.
- Few shared clonotypes were found between MCD, FSGS, and MN patients.
Conclusions:
- Current data do not strongly support a direct role for adaptive immune T-cells in the pathogenesis of minimal change disease.
- Further research with larger sample sizes is needed to fully elucidate the role of T-cells in MCD.
- The study highlights the complexity of MCD pathobiology and the need for continued investigation.
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