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Updated: Sep 2, 2025

Gel-seq: A Method for Simultaneous Sequencing Library Preparation of DNA and RNA Using Hydrogel Matrices
Published on: March 26, 2018
Gel purification of gDNA for next-generation sequencing applications
Supanut Utthiya1, Passorn Wonnapinij1,2,3, Pondpan Napaumpaiporn1
1Department of Genetics, Faculty of Science, Kasetsart University, Bangkok, 10900, Thailand.
Abstract:
We demonstrate that gDNA can be conveniently and efficiently isolated and purified using standard agarose gel electrophoresis, band excision and gel purification. This method yields a substantial amount at microgram levels of gDNA per gel cleanup with high purity. An RNase A treatment step can be omitted. The quality of gDNA is suitable for next-generation sequencing, resulting in >10 Mb reads and high-quality read data (Phred score >28 up to 100 of 150 base reads). Furthermore, the gDNA can be kept intact in a gel slice for several days. This method has been tested for dictyostelids, bacteria and plants.
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