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Epigenetic reader SP140 loss of function drives Crohn's disease due to uncontrolled macrophage topoisomerases
Hajera Amatullah1, Isabella Fraschilla2, Sreehaas Digumarthi3
1Center for the Study of Inflammatory Bowel Disease, Division of Gastroenterology, Department of Medicine, Massachusetts General Hospital Research Institute, Boston, MA 02114, USA; Harvard Medical School, Boston, MA 02115, USA.
Abstract:
How mis-regulated chromatin directly impacts human immune disorders is poorly understood. Speckled Protein 140 (SP140) is an immune-restricted PHD and bromodomain-containing epigenetic "reader," and SP140 loss-of-function mutations associate with Crohn's disease (CD), multiple sclerosis (MS), and chronic lymphocytic leukemia (CLL). However, the relevance of these mutations and mechanisms underlying SP140-driven pathogenicity remains unexplored. Using a global proteomic strategy, we identified SP140 as a repressor of topoisomerases (TOPs) that maintains heterochromatin and macrophage fate. In humans and mice, SP140 loss resulted in unleashed TOP activity, de-repression of developmentally silenced genes, and ultimately defective microbe-inducible macrophage transcriptional programs and bacterial killing that drive intestinal pathology. Pharmacological inhibition of TOP1/2 rescued these defects. Furthermore, exacerbated colitis was restored with TOP1/2 inhibitors in Sp140-/- mice, but not wild-type mice, in vivo. Collectively, we identify SP140 as a TOP repressor and reveal repurposing of TOP inhibition to reverse immune diseases driven by SP140 loss.
Insights
Loss of Speckled Protein 140 (SP140) disrupts immune cell function by unleashing topoisomerase activity, leading to immune disorders. Inhibiting topoisomerases (TOPs) rescues these defects, offering a potential treatment for SP140-related diseases.
Area of Science:
- Immunology
- Epigenetics
- Molecular Biology
Background:
- Speckled Protein 140 (SP140) is an epigenetic regulator implicated in immune disorders like Crohn's disease (CD), multiple sclerosis (MS), and chronic lymphocytic leukemia (CLL).
- The precise mechanisms by which SP140 mutations contribute to disease pathogenesis remain largely unknown.
Purpose of the Study:
- To elucidate the molecular function of SP140 in immune regulation.
- To investigate the role of SP140 in maintaining chromatin structure and macrophage function.
- To explore therapeutic strategies targeting SP140-associated immune defects.
Main Methods:
- Global proteomic analysis to identify SP140 interacting proteins.
- In vitro and in vivo studies using SP140 loss-of-function models (SP140-/- mice).
- Assessment of macrophage transcriptional programs, bacterial killing assays, and pharmacological inhibition of topoisomerases (TOP1/2).
Main Results:
- SP140 was identified as a repressor of topoisomerases (TOPs), crucial for maintaining heterochromatin and macrophage identity.
- SP140 deficiency led to increased TOP activity, aberrant gene expression, and impaired macrophage responses to microbes.
- Pharmacological inhibition of TOP1/2 restored normal macrophage function and ameliorated intestinal pathology in SP140-deficient mice.
- TOP1/2 inhibition specifically rescued defects in SP140-/- mice, not wild-type mice.
Conclusions:
- SP140 acts as a critical repressor of topoisomerases, safeguarding epigenetic stability and immune cell function.
- Loss of SP140 function unleashes TOP activity, causing de-repression of silenced genes and immune dysfunction.
- Targeting topoisomerase activity represents a promising therapeutic approach for immune diseases associated with SP140 loss.
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