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Updated: Sep 1, 2025

Using RNA-sequencing to Detect Novel Splice Variants Related to Drug Resistance in In Vitro Cancer Models
Published on: December 9, 2016
RNA splicing: a dual-edged sword for hepatocellular carcinoma
Anjali Kashyap1, Greesham Tripathi2, Avantika Tripathi2
1Department of Biotechnology, Thapar Institute of Engineering & Technology, Patiala, Punjab, India.
Abstract:
RNA splicing is the fundamental process that brings diversity at the transcriptome and proteome levels. The spliceosome complex regulates minor and major processes of RNA splicing. Aberrant regulation is often associated with different diseases, including diabetes, stroke, hypertension, and cancer. In the majority of cancers, dysregulated alternative RNA splicing (ARS) events directly affect tumor progression, invasiveness, and often lead to poor survival of the patients. Alike the rest of the gastrointestinal malignancies, in hepatocellular carcinoma (HCC), which alone contributes to ~ 75% of the liver cancers, a large number of ARS events have been observed, including intron retention, exon skipping, presence of alternative 3'-splice site (3'SS), and alternative 5'-splice site (5'SS). These events are reported in spliceosome and non-spliceosome complexes genes. Molecules such as MCL1, Bcl-X, and BCL2 in different isoforms can behave as anti-apoptotic or pro-apoptotic, making the spliceosome complex a dual-edged sword. The anti-apoptotic isoforms of such molecules bring in resistance to chemotherapy or cornerstone drugs. However, in contrast, multiple malignant tumors, including HCC that target the pro-apoptotic favoring isoforms/variants favor apoptotic induction and make chemotherapy effective. Herein, we discuss different splicing events, aberrations, and antisense oligonucleotides (ASOs) in modulating RNA splicing in HCC tumorigenesis with a possible therapeutic outcome.
Insights
Alternative RNA splicing (ARS) dysregulation drives hepatocellular carcinoma (HCC) progression and chemoresistance. Targeting ARS with antisense oligonucleotides (ASOs) offers a potential therapeutic strategy for liver cancer.
Area of Science:
- Molecular Biology
- Cancer Biology
- Genetics
Background:
- Alternative RNA splicing (ARS) generates transcriptome and proteome diversity, crucial for cellular function.
- Aberrant ARS is implicated in various diseases, notably cancer, where it influences tumor progression and patient survival.
- Hepatocellular carcinoma (HCC), a major liver cancer, exhibits numerous ARS events affecting key genes.
Purpose of the Study:
- To discuss RNA splicing events and aberrations in hepatocellular carcinoma (HCC).
- To explore the role of antisense oligonucleotides (ASOs) in modulating RNA splicing for HCC therapy.
- To highlight the therapeutic potential of targeting ARS in liver cancer.
Main Methods:
- Review of scientific literature on RNA splicing, HCC, and therapeutic strategies.
- Analysis of alternative splicing events, including intron retention and exon skipping in HCC.
- Discussion of spliceosome and non-spliceosome gene involvement in cancer.
Main Results:
- Dysregulated ARS significantly impacts HCC tumor progression, invasiveness, and patient outcomes.
- Specific ARS events in HCC can lead to anti-apoptotic isoforms, conferring chemoresistance.
- Targeting pro-apoptotic splicing variants can enhance chemotherapy efficacy in HCC.
Conclusions:
- Altering RNA splicing presents a promising therapeutic avenue for HCC.
- Antisense oligonucleotides (ASOs) show potential for modulating aberrant splicing in liver cancer.
- Targeting ARS aberrations could overcome chemotherapy resistance in HCC.
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