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Updated: Sep 1, 2025

Using RNA-sequencing to Detect Novel Splice Variants Related to Drug Resistance in In Vitro Cancer Models
Published on: December 9, 2016
RNA splicing: a dual-edged sword for hepatocellular carcinoma
Anjali Kashyap1, Greesham Tripathi2, Avantika Tripathi2
1Department of Biotechnology, Thapar Institute of Engineering & Technology, Patiala, Punjab, India.
Alternative RNA splicing (ARS) dysregulation drives hepatocellular carcinoma (HCC) progression and chemoresistance. Targeting ARS with antisense oligonucleotides (ASOs) offers a potential therapeutic strategy for liver cancer.
Area of Science:
- Molecular Biology
- Cancer Biology
- Genetics
Background:
- Alternative RNA splicing (ARS) generates transcriptome and proteome diversity, crucial for cellular function.
- Aberrant ARS is implicated in various diseases, notably cancer, where it influences tumor progression and patient survival.
- Hepatocellular carcinoma (HCC), a major liver cancer, exhibits numerous ARS events affecting key genes.
Purpose of the Study:
- To discuss RNA splicing events and aberrations in hepatocellular carcinoma (HCC).
- To explore the role of antisense oligonucleotides (ASOs) in modulating RNA splicing for HCC therapy.
- To highlight the therapeutic potential of targeting ARS in liver cancer.
Main Methods:
- Review of scientific literature on RNA splicing, HCC, and therapeutic strategies.
- Analysis of alternative splicing events, including intron retention and exon skipping in HCC.
- Discussion of spliceosome and non-spliceosome gene involvement in cancer.
Main Results:
- Dysregulated ARS significantly impacts HCC tumor progression, invasiveness, and patient outcomes.
- Specific ARS events in HCC can lead to anti-apoptotic isoforms, conferring chemoresistance.
- Targeting pro-apoptotic splicing variants can enhance chemotherapy efficacy in HCC.
Conclusions:
- Altering RNA splicing presents a promising therapeutic avenue for HCC.
- Antisense oligonucleotides (ASOs) show potential for modulating aberrant splicing in liver cancer.
- Targeting ARS aberrations could overcome chemotherapy resistance in HCC.
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