Related Experiment Video
Updated: Aug 31, 2025

Identification of Transcription Factor Regulators using Medium-Throughput Screening of Arrayed Libraries and a Dual-Luciferase-Based Reporter
Published on: March 27, 2020
Regulation of neuroendocrine plasticity by the RNA-binding protein ZFP36L1
Hsiao-Yun Chen1, Yavuz T Durmaz1, Yixiang Li1
1Department of Medical Oncology, Dana-Farber Cancer Institute and Brigham and Women's Hospital, Harvard Medical School, Boston, MA, 02215, USA.
Abstract:
Some small cell lung cancers (SCLCs) are highly sensitive to inhibitors of the histone demethylase LSD1. LSD1 inhibitors are thought to induce their anti-proliferative effects by blocking neuroendocrine differentiation, but the mechanisms by which LSD1 controls the SCLC neuroendocrine phenotype are not well understood. To identify genes required for LSD1 inhibitor sensitivity in SCLC, we performed a positive selection genome-wide CRISPR/Cas9 loss of function screen and found that ZFP36L1, an mRNA-binding protein that destabilizes mRNAs, is required for LSD1 inhibitor sensitivity. LSD1 binds and represses ZFP36L1 and upon LSD1 inhibition, ZFP36L1 expression is restored, which is sufficient to block the SCLC neuroendocrine differentiation phenotype and induce a non-neuroendocrine "inflammatory" phenotype. Mechanistically, ZFP36L1 binds and destabilizes SOX2 and INSM1 mRNAs, two transcription factors that are required for SCLC neuroendocrine differentiation. This work identifies ZFP36L1 as an LSD1 target gene that controls the SCLC neuroendocrine phenotype and demonstrates that modulating mRNA stability of lineage transcription factors controls neuroendocrine to non-neuroendocrine plasticity.
Insights
Small cell lung cancer (SCLC) cells sensitive to LSD1 inhibitors rely on ZFP36L1. Restoring ZFP36L1 blocks neuroendocrine differentiation, revealing a new therapeutic target for SCLC treatment.
Area of Science:
- Oncology
- Molecular Biology
- Epigenetics
Background:
- Small cell lung cancer (SCLC) exhibits sensitivity to LSD1 inhibitors.
- LSD1 inhibitors' anti-proliferative effects are linked to blocking neuroendocrine differentiation.
- The precise mechanisms of LSD1 in controlling the SCLC neuroendocrine phenotype remain unclear.
Purpose of the Study:
- To identify genes crucial for LSD1 inhibitor sensitivity in SCLC.
- To elucidate the role of ZFP36L1 in LSD1 inhibitor response and SCLC neuroendocrine plasticity.
Main Methods:
- Genome-wide CRISPR/Cas9 loss-of-function screen for positive selection.
- Analysis of ZFP36L1's interaction with LSD1 and its target mRNAs (SOX2, INSM1).
- Assessment of ZFP36L1's impact on SCLC neuroendocrine differentiation and phenotype.
Main Results:
- ZFP36L1 was identified as essential for LSD1 inhibitor sensitivity in SCLC.
- LSD1 represses ZFP36L1; LSD1 inhibition restores ZFP36L1 expression.
- Restored ZFP36L1 blocks SCLC neuroendocrine differentiation, inducing an "inflammatory" phenotype.
Conclusions:
- ZFP36L1 is an LSD1 target gene that regulates the SCLC neuroendocrine phenotype.
- Modulating mRNA stability of lineage transcription factors controls neuroendocrine plasticity in SCLC.
- ZFP36L1 represents a potential therapeutic target for SCLC treatment.
Related Concept Videos
Chromatin Structure Regulates pre-mRNA Processing
The chromatin structure, especially...
Regulation of Expression at Multiple Steps
Regulation of Expression Occurs at Multiple Steps
Transcription results in the generation of precursor (pre-mRNA) that consists of both exons and introns, which needs further processing before being translated to a...
Epigenetic Regulation
Master Transcription Regulators
Regulation of Nuclear Protein Sorting

